Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 2.5e-276 954.9 509 100.0
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.5e-276 954.9 509 100.0
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.5e-276 954.9 509 100.0
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-274 948.3 509 99.0
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 9.8e-273 943.0 509 98.2
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 4.3e-268 927.5 509 95.5
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.5e-262 907.9 493 98.0
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 5.2e-258 894.0 509 91.0
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 6.8e-258 893.6 509 91.4
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 9.8e-257 889.8 509 89.8
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.1e-251 872.1 509 87.2
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.8e-250 869.0 509 86.4
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 2.3e-250 868.6 509 87.6
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.2e-249 866.3 510 86.9
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 4.4e-249 864.4 509 87.0
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.7e-248 862.4 509 87.0
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.7e-248 862.4 510 87.1
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 6.4e-248 860.5 510 85.7
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 8.3e-248 860.1 510 85.5
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 1.1e-247 859.8 511 86.5
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 86.3
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 86.3
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 4.1e-247 857.8 510 86.1
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 5.4e-247 857.4 509 86.6
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 85.9
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 7.1e-247 857.1 509 85.7
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 9.2e-247 856.7 511 85.9
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 85.1
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 9.2e-247 856.7 511 86.3
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 86.1
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 2.1e-246 855.5 510 86.3
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 2.1e-246 855.5 511 85.5
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.1e-246 855.5 511 86.1
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 2.1e-246 855.5 510 86.1
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 2.7e-246 855.1 509 85.9
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 3.5e-246 854.7 511 86.3
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 4.6e-246 854.4 510 85.5
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 86.5
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 85.7
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 7.8e-246 853.6 510 85.1
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.0e-245 853.2 510 85.5
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.0e-245 853.2 511 86.1
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.0e-245 853.2 510 84.9
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 1.7e-245 852.4 510 85.5
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 3.9e-245 851.3 510 85.1
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 5.1e-245 850.9 511 85.5
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 85.5
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 3.3e-244 848.2 510 86.5
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.6e-244 847.4 512 85.7
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 5.6e-244 847.4 510 84.3
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 7.3e-244 847.0 510 84.7
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 7.3e-244 847.0 510 85.5
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 84.9
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 8.1e-243 843.6 511 85.3
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.4e-242 842.8 510 84.7
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.8e-242 842.4 510 85.5
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 83.9
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 83.9
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 84.7
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 84.3
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 4.0e-242 841.3 510 84.1
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 5.2e-242 840.9 510 83.5
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 5.2e-242 840.9 510 83.7
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.2e-241 839.7 510 83.9
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.6e-241 838.6 510 82.9
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.6e-241 838.6 510 83.3
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 7.6e-241 837.0 510 83.9
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 7.6e-241 837.0 510 83.7
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 7.6e-241 837.0 509 84.3
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 9.9e-241 836.6 509 83.7
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 9.9e-241 836.6 511 83.4
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 9.9e-241 836.6 510 83.5
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 82.5
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 1.7e-240 835.9 510 83.9
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 1.7e-240 835.9 510 83.9
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 3.8e-240 834.7 511 82.8
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 3.8e-240 834.7 510 82.7
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 6.4e-240 833.9 526 81.9
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.1e-239 833.2 510 82.5
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 1.1e-239 833.2 509 84.1
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.4e-239 832.0 510 84.1
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.2e-239 831.6 509 83.7
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 7.1e-239 830.5 510 82.2
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 9.2e-239 830.1 509 83.7
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 9.2e-239 830.1 510 82.4
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 3.5e-238 828.2 510 83.1
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.0e-237 826.6 510 83.7
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.7e-237 825.9 510 81.8
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 1.7e-237 825.9 549 78.7
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.3e-237 825.5 511 83.8
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 8.7e-237 823.5 511 83.2
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 1.1e-236 823.2 511 83.2
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 2.5e-236 822.0 510 81.8
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 3.3e-236 821.6 510 81.6
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 4.3e-236 821.2 510 81.6
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 7.3e-236 820.5 502 84.7
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 9.6e-236 820.1 510 81.4
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.6e-235 819.3 509 81.5
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 4.7e-235 817.8 510 82.2
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 6.2e-235 817.4 510 82.5
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 1.8e-234 815.8 512 82.4
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 2.4e-234 815.5 512 81.8
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.5e-233 812.8 510 81.0
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.4e-233 811.6 510 81.0
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.3e-232 809.7 524 80.2
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 9.3e-231 803.5 489 83.6
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.2e-230 803.1 494 84.6
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.1e-230 802.4 494 82.6
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 1.7e-229 799.3 511 81.4
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 6.6e-229 797.3 505 82.2
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.3e-228 795.0 510 79.4
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.3e-228 795.0 510 79.4
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 4.3e-228 794.7 510 79.2
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 9.6e-228 793.5 510 79.2
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 2.1e-227 792.3 493 82.8
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 2.4e-226 788.9 494 81.0
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 6.9e-226 787.3 472 86.0
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 4.5e-225 784.6 548 76.3
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 9.9e-225 783.5 556 75.5
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 4.9e-224 781.2 511 80.2
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 1.6e-222 776.2 509 78.8
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 5.1e-221 771.2 510 76.5
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.8e-219 765.4 511 77.5
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.2e-217 760.0 510 76.1
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.9e-216 755.4 509 77.2
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 4.9e-216 754.6 524 76.5
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 4.9e-216 754.6 524 76.5
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 7.1e-215 750.7 512 77.0
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.0e-205 720.3 440 82.7
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 4.6e-198 694.9 471 78.8
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 6.1e-198 694.5 511 72.6
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.8e-194 682.9 413 84.3
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 5.9e-193 677.9 503 72.0
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 2.5e-191 672.5 514 65.8
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.4e-186 656.8 509 69.7
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.8e-186 656.4 503 68.4
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.4e-178 630.2 468 71.8
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 2.9e-176 622.5 514 60.9
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.2e-174 617.1 375 84.0
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 5.5e-167 591.7 364 82.1
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.2e-166 590.5 494 60.9
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 4.0e-165 585.5 522 59.4
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 6.8e-165 584.7 364 83.2
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 7.5e-164 581.3 511 58.9
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.1e-162 577.4 506 64.0
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.2e-161 573.9 379 78.6
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 6.1e-158 561.6 346 83.2
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.1e-154 550.8 499 56.1
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 5.9e-153 545.0 325 86.2
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.1e-146 522.3 456 65.8
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 3.5e-145 519.2 307 87.3
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.9e-136 489.2 284 89.1
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 8.1e-134 481.5 383 65.0
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 8.4e-115 418.3 514 45.7
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.7e-112 410.6 254 81.5
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 8.1e-110 401.7 245 85.7
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.2e-107 393.7 386 56.0
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 4.2e-106 389.4 485 45.2
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 3.1e-101 373.2 279 72.4
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 7.4e-95 352.1 520 37.9
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 8.2e-78 295.4 199 79.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.0e-72 278.5 343 48.1
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 2.0e-68 264.2 502 39.8
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.4e-61 241.5 288 48.6
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.3e-59 235.0 144 82.6
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 3.2e-58 230.3 359 42.9
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.3e-46 189.1 206 53.4
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 2.4e-45 187.6 117 75.2
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.2e-44 185.3 154 70.8
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.3e-43 181.0 197 52.3
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.9e-35 154.1 106 74.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.4e-31 140.6 119 58.0
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 2.5e-26 124.4 82 80.5
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 2.7e-20 104.4 121 56.2
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 3.9e-11 73.9 63 60.3
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 1.1e-08 65.9 37 83.8
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.8e-08 65.1 96 50.0
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 1.7e-06 58.5 38 76.3


User provided reference genes

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