Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-222 776.5 420 100.0
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.8e-219 765.8 424 98.6
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.8e-219 763.5 422 98.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.7e-204 715.3 420 92.6
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 7.2e-112 408.3 441 58.3
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.2e-111 407.5 436 58.3
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 3.7e-108 396.0 439 57.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.5e-93 347.4 452 46.5
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 4.8e-84 315.8 451 45.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.1e-83 314.7 451 45.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.1e-83 313.2 443 49.0
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.1e-83 313.2 448 48.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 4.1e-83 312.8 456 46.1
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 7.7e-82 308.5 439 44.9
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.0e-81 308.1 449 45.7
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 1.3e-81 307.8 450 47.8
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.4e-78 297.7 446 47.1
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 2.3e-78 297.0 448 45.8
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.0e-78 296.6 460 43.7
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 5.2e-78 295.8 446 44.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.7e-76 290.8 428 43.7
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.8e-76 289.3 446 43.5
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 6.3e-76 288.9 428 44.2
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.6e-74 284.3 443 42.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.5e-74 283.1 450 42.0
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.7e-74 282.0 451 45.2
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.5e-73 278.9 453 44.8
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.5e-72 276.9 441 42.0
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 7.2e-72 275.4 444 42.3
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 9.5e-72 275.0 451 44.8
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 9.5e-72 275.0 455 42.2
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.2e-71 274.6 449 43.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.6e-71 273.1 442 42.3
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.0e-70 270.0 453 40.4
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.2e-69 268.1 443 40.6
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.7e-68 264.2 455 40.7
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.4e-67 260.4 444 39.6
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 4.5e-66 256.1 443 40.0
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.0e-65 255.0 467 39.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.9e-64 250.8 375 43.2
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 9.5e-64 248.4 444 42.6
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 9.5e-64 248.4 433 41.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.6e-63 247.7 450 40.9
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 6.1e-63 245.7 439 41.0
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.2e-61 241.5 429 39.6
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.0e-61 240.7 442 39.8
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.7e-60 237.7 435 41.6
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 7.0e-59 232.3 484 37.0
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 9.2e-59 231.9 427 38.4
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.7e-57 227.6 436 38.3
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.3e-57 227.3 436 39.0
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.1e-56 224.9 442 40.3
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.5e-56 224.6 439 39.4
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.9e-56 224.2 440 38.0
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.5e-56 223.8 441 41.3
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.2e-55 221.5 460 40.0
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.6e-55 221.1 451 38.6
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.6e-55 221.1 434 39.6
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.1e-55 220.7 383 38.4
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 2.1e-55 220.7 439 39.0
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 3.6e-55 219.9 453 40.0
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.1e-54 218.4 439 38.7
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.1e-54 218.4 437 39.8
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 4.0e-54 216.5 491 34.6
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.0e-54 216.5 438 38.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.2e-54 216.1 373 39.4
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.8e-54 215.7 444 35.8
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.6e-53 213.8 476 36.6
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.4e-53 213.4 464 38.8
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 4.4e-53 213.0 452 36.9
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 4.4e-53 213.0 449 36.3
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 7.5e-53 212.2 430 37.7
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 7.5e-53 212.2 440 38.9
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.2e-52 210.7 419 37.0
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 6.4e-52 209.1 430 37.2
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 6.4e-52 209.1 436 37.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 5.4e-51 206.1 443 39.1
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 5.4e-51 206.1 423 36.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 7.0e-51 205.7 442 38.5
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 7.0e-51 205.7 424 36.6
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.7e-50 203.8 439 37.1
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.7e-50 203.8 485 35.5
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 7.8e-50 202.2 456 38.2
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.7e-49 201.1 454 36.3
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 5.1e-49 199.5 440 34.5
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.5e-48 197.2 438 36.3
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 5.6e-48 196.1 435 34.0
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 9.5e-48 195.3 431 37.4
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.2e-47 194.9 436 37.8
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.1e-47 194.1 381 36.5
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.1e-47 194.1 424 34.0
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.8e-47 193.7 443 37.0
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.7e-47 193.0 423 34.8
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 4.7e-47 193.0 452 35.8
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-46 191.4 437 34.1
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.8e-46 191.0 407 35.1
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.2e-46 189.5 428 35.3
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.8e-46 189.1 467 34.9
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 6.8e-46 189.1 429 34.5
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 8.9e-46 188.7 451 36.1
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.5e-45 188.0 444 34.9
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.0e-45 187.6 432 33.8
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.8e-45 186.0 443 36.3
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.9e-45 185.3 434 35.0
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.3e-44 184.9 414 38.6
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.3e-44 184.9 432 34.3
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.7e-44 184.5 444 36.0
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.2e-44 184.1 439 33.5
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.2e-44 184.1 454 33.0
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.4e-43 181.4 430 33.7
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.9e-43 181.0 451 34.8
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.9e-43 181.0 448 34.8
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 4.1e-43 179.9 345 39.7
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.1e-43 179.9 444 38.1
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 7.1e-43 179.1 435 32.0
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.6e-42 176.4 454 33.9
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 7.8e-42 175.6 444 34.2
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.3e-41 174.9 434 36.2
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 5.6e-40 169.5 321 39.3
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.2e-39 168.3 460 32.2
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-39 168.3 433 33.7
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.6e-39 166.8 432 33.3
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.1e-38 165.2 441 33.3
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 4.0e-38 163.3 438 32.2
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 8.9e-38 162.2 438 34.2
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 9.9e-37 158.7 427 34.4
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.9e-36 157.1 445 32.6
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 2.9e-36 157.1 446 35.0
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.4e-35 154.8 427 32.8
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.4e-35 154.1 409 34.0
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 3.2e-35 153.7 432 34.3
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 5.4e-35 152.9 416 33.7
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.2e-34 151.8 407 33.4
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.2e-34 151.8 139 66.2
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.6e-34 151.4 436 31.9
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 2.1e-34 151.0 425 33.4
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.7e-33 147.9 435 32.6
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.3e-33 147.5 437 31.1
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.5e-32 144.8 428 32.5
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.6e-32 142.9 431 32.5
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 5.6e-32 142.9 434 31.3
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.6e-32 142.1 375 34.7
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.6e-32 142.1 428 32.2
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 6.2e-31 139.4 421 30.9
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 6.2e-31 139.4 433 30.5
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.1e-30 138.7 452 31.6
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.1e-30 138.7 285 38.2
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.4e-30 138.3 438 31.3
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.8e-30 137.9 434 30.6
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 5.3e-30 136.3 362 35.6
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 9.0e-30 135.6 432 31.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.6e-29 134.0 304 36.8
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.4e-29 133.7 437 31.4
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 3.4e-29 133.7 418 30.6
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 4.4e-29 133.3 319 32.9
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.7e-28 131.3 442 30.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.2e-28 131.0 319 33.2
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.9e-28 130.6 437 30.2
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 3.8e-28 130.2 362 32.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 3.2e-27 127.1 423 30.3
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 7.1e-27 125.9 361 31.0
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.5e-26 123.6 430 30.2
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 6.0e-26 122.9 436 30.0
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.9e-25 120.2 443 32.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 5.1e-25 119.8 427 28.6
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.3e-23 115.2 284 32.7
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-21 107.8 178 43.8
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 5.8e-21 106.3 318 33.3
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.4e-20 102.8 414 30.0
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.6e-18 98.2 254 35.0
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.3e-17 95.1 165 39.4
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 4.5e-13 80.1 393 26.0
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 7.6e-13 79.3 190 32.1
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.8e-09 68.2 527 23.1
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.3e-09 67.8 531 26.2
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.5e-08 65.1 154 35.7
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 2.5e-08 64.3 107 39.3
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 3.3e-08 63.9 69 44.9
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.3e-08 63.9 97 41.2
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 5.6e-08 63.2 69 44.9
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 7.4e-08 62.8 187 29.9
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 9.6e-08 62.4 245 27.8
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-07 61.6 69 43.5
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.8e-07 60.8 124 34.7
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 4.8e-07 60.1 69 44.9
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.8e-06 58.2 200 32.0


User provided reference genes

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