Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.4e-112 407.9 198 100.0
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 9.8e-104 380.2 184 98.9
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 4.5e-72 275.0 192 69.8
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 3.0e-44 182.6 169 56.8
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.2e-42 174.5 173 53.2
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 2.0e-40 169.9 173 52.6
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-40 169.9 173 52.6
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 5.9e-40 168.3 176 51.7
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 1.4e-38 163.7 179 52.0
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 5.5e-38 161.8 177 48.6
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-37 159.8 179 52.0
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.1e-37 158.3 179 50.8
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.2e-34 149.8 176 49.4
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 2.8e-34 149.4 166 44.0
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.8e-34 148.7 200 41.5
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.8e-34 148.7 200 41.5
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 1.1e-33 147.5 199 41.2
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.6e-32 143.7 170 47.6
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-32 142.9 211 43.1
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.5e-30 137.1 172 43.6
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 1.5e-30 137.1 176 43.2
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.9e-30 136.7 172 44.2
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 4.2e-30 135.6 205 37.1
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 4.2e-30 135.6 173 41.6
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 9.4e-30 134.4 176 42.6
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.7e-29 132.9 166 42.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 1.8e-28 130.2 171 41.5
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.8e-28 130.2 171 41.5
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.8e-28 130.2 179 40.2
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 3.0e-28 129.4 168 39.9
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 5.2e-28 128.6 168 35.7
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 8.8e-28 127.9 168 35.7
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 8.8e-28 127.9 193 37.3
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 8.8e-28 127.9 179 42.5
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 1.1e-27 127.5 174 36.8
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 2.6e-27 126.3 200 38.0
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 7.5e-27 124.8 178 39.3
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-26 124.0 175 40.6
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-26 124.0 175 40.6
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-26 124.0 175 40.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.3e-26 124.0 166 35.5
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.3e-26 124.0 168 39.9
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.7e-26 123.6 171 38.0
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 2.2e-26 123.2 195 35.9
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.7e-26 122.5 166 35.5
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 3.7e-26 122.5 164 38.4
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.8e-26 122.1 166 35.5
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 6.3e-26 121.7 173 39.3
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 8.2e-26 121.3 171 40.4
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 1.1e-25 120.9 170 38.8
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 1.1e-25 120.9 160 41.2
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 1.8e-25 120.2 169 40.2
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 2.4e-25 119.8 193 35.8
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 4.1e-25 119.0 171 42.1
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 5.9e-24 115.2 167 38.3
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 5.9e-24 115.2 171 36.3
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 3.8e-23 112.5 172 36.0
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 6.5e-23 111.7 209 32.5
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 1.5e-22 110.5 173 37.6
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 2.5e-22 109.8 195 31.3
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 3.2e-22 109.4 173 35.8
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 3.2e-22 109.4 169 33.7
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 4.2e-22 109.0 164 36.6
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 5.5e-22 108.6 171 34.5
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 5.5e-22 108.6 169 32.5
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 7.2e-22 108.2 171 38.6
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 7.2e-22 108.2 169 39.1
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 9.4e-22 107.8 170 36.5
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 9.4e-22 107.8 181 32.0
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 1.2e-21 107.5 164 36.6
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.2e-21 107.5 170 37.1
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.6e-21 107.1 169 36.7
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 1.6e-21 107.1 163 37.4
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 2.1e-21 106.7 164 36.6
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 2.1e-21 106.7 164 37.2
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.7e-21 106.3 179 34.1
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 3.6e-21 105.9 171 35.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 3.6e-21 105.9 169 37.3
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.7e-21 105.5 172 36.0
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 6.1e-21 105.1 164 36.6
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-21 105.1 174 32.2
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-21 105.1 166 34.9
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-21 105.1 166 34.9
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-21 105.1 169 32.5
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 8.0e-21 104.8 171 32.7
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 1.0e-20 104.4 174 35.1
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.0e-20 104.4 168 32.7
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 3.0e-20 102.8 173 34.1
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 5.2e-20 102.1 169 32.0
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 5.2e-20 102.1 170 34.1
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 6.8e-20 101.7 183 35.0
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 6.8e-20 101.7 171 35.7
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 6.8e-20 101.7 171 32.7
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 8.8e-20 101.3 166 33.7
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 8.8e-20 101.3 171 34.5
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-19 100.9 169 31.4
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.5e-19 100.5 171 31.6
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.5e-19 100.5 169 36.1
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.0e-19 100.1 184 32.1
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.0e-19 100.1 184 30.4
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 3.4e-19 99.4 171 34.5
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.4e-19 99.4 179 33.0
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 4.4e-19 99.0 171 36.8
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 4.4e-19 99.0 107 46.7
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 4.4e-19 99.0 175 31.4
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 5.7e-19 98.6 187 31.6
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 7.5e-19 98.2 193 31.6
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 1.7e-18 97.1 184 31.0
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 2.8e-18 96.3 167 32.9
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 3.7e-18 95.9 100 48.0
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.7e-18 95.9 169 32.5
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 6.3e-18 95.1 169 34.9
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 6.3e-18 95.1 187 33.2
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 1.1e-17 94.4 167 34.7
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 1.1e-17 94.4 172 33.1
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-17 94.0 172 33.1
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 5.4e-17 92.0 174 35.6
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 9.1e-17 91.3 172 33.1
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 1.6e-16 90.5 193 30.6
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 4.5e-16 89.0 170 31.2
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 4.5e-16 89.0 186 30.1
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 4.5e-16 89.0 98 38.8
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 7.7e-16 88.2 129 37.2
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 7.7e-16 88.2 200 30.5
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-15 87.8 165 31.5
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 1.0e-15 87.8 170 31.8
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 2.9e-15 86.3 167 32.9
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.8e-15 85.9 97 40.2
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 5.0e-15 85.5 169 30.2
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 1.9e-14 83.6 172 32.0
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 3.2e-14 82.8 186 34.4
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.6e-13 80.5 161 29.2
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 2.1e-13 80.1 120 37.5
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 3.6e-13 79.3 168 32.1
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.7e-13 79.0 174 35.6
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 6.1e-13 78.6 157 30.6
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 3.0e-12 76.3 174 25.3
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 6.8e-12 75.1 139 33.8
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 8.8e-12 74.7 117 38.5
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 8.8e-12 74.7 101 37.6
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 1.2e-11 74.3 98 38.8
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 1.2e-11 74.3 99 38.4
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 3.4e-11 72.8 129 36.4
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 4.4e-11 72.4 100 34.0
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 5.7e-11 72.0 161 29.8
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 8.3e-10 68.2 113 35.4
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 2.0e-08 63.5 98 34.7
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 1.0e-07 61.2 119 28.6
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 1.7e-07 60.5 114 32.5
PGR102G0547 Punica granatum HOM05D001613 ORTHO05D001556 1.1e-06 57.8 132 30.3
Zm00001eb310530 Zea mays HOM05D001613 ORTHO05D001556 1.5e-06 57.4 130 31.5
C05p13340 Brassica napus HOM05D001613 ORTHO05D001556 1.9e-06 57.0 146 25.3
BolC5t30071H Brassica oleracea HOM05D001613 ORTHO05D001556 1.9e-06 57.0 146 25.3
Eucgr.F03070 Eucalyptus grandis HOM05D001613 ORTHO05D001556 1.9e-06 57.0 145 27.6
Actinidia09005 Actinidia chinensis HOM05D001613 ORTHO05D001556 2.5e-06 56.6 145 30.3
Actinidia39137 Actinidia chinensis HOM05D001613 ORTHO05D001556 2.5e-06 56.6 145 30.3
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 2.5e-06 56.6 134 30.6
A06p11210 Brassica napus HOM05D001613 ORTHO05D001556 4.3e-06 55.8 146 25.3
BraA06t24301Z Brassica rapa HOM05D001613 ORTHO05D001556 4.3e-06 55.8 146 25.3
Phvul.010G145800 Phaseolus vulgaris HOM05D001613 ORTHO05D001556 4.3e-06 55.8 154 29.2
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 5.6e-06 55.5 130 31.5
Rhsim12G0202800 Rhododendron simsii HOM05D001613 ORTHO05D001556 5.6e-06 55.5 147 29.3
ClCG11G015080 Citrullus lanatus HOM05D001613 ORTHO05D001556 9.5e-06 54.7 145 31.0


User provided reference genes

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