Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.3e-64 249.6 124 100.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 8.1e-64 246.9 124 99.2
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.9e-60 235.7 117 100.0
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.1e-58 227.6 124 91.9
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 6.7e-58 227.3 124 90.3
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.8e-56 221.9 130 88.5
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 2.8e-40 168.7 122 73.8
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 1.1e-36 156.8 125 68.0
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.6e-35 152.9 125 68.0
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 9.7e-25 117.1 101 66.3
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 1.3e-24 116.7 99 63.6
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 8.2e-24 114.0 99 62.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 2.9e-21 105.5 88 67.0
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 2.9e-21 105.5 86 61.6
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 8.5e-21 104.0 104 56.7
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 2.5e-20 102.4 87 66.7
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.5e-20 102.4 89 60.7
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 5.5e-20 101.3 91 54.9
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 9.4e-20 100.5 99 61.6
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 9.4e-20 100.5 99 57.6
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.6e-19 99.8 96 59.4
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.6e-19 99.8 99 58.6
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 2.7e-19 99.0 88 62.5
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 3.6e-19 98.6 91 60.4
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 6.1e-19 97.8 103 61.2
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 6.1e-19 97.8 103 53.4
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.0e-18 97.1 102 58.8
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 2.3e-18 95.9 86 59.3
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 3.0e-18 95.5 99 57.6
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 3.0e-18 95.5 89 57.3
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 4.0e-18 95.1 96 53.1
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 8.8e-18 94.0 87 56.3
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 8.8e-18 94.0 102 56.9
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 8.8e-18 94.0 97 54.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.2e-17 93.6 93 60.2
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.5e-17 93.2 93 60.2
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 2.6e-17 92.4 66 71.2
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.7e-17 91.3 93 59.1
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 5.7e-17 91.3 103 53.4
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 9.8e-17 90.5 89 56.2
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.7e-16 89.7 89 56.2
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 2.8e-16 89.0 66 65.2
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 3.7e-16 88.6 91 58.2
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 3.7e-16 88.6 107 49.5
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 4.8e-16 88.2 89 53.9
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 4.8e-16 88.2 83 51.8
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 6.3e-16 87.8 95 57.9
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 8.3e-16 87.4 82 59.8
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 8.3e-16 87.4 93 52.7
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.8e-15 86.3 101 52.5
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 2.4e-15 85.9 105 51.4
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 2.4e-15 85.9 52 78.8
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 3.1e-15 85.5 57 70.2
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 4.1e-15 85.1 82 58.5
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 4.1e-15 85.1 100 53.0
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 5.4e-15 84.7 91 53.8
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 5.4e-15 84.7 85 60.0
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 1.2e-14 83.6 78 60.3
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 2.0e-14 82.8 95 52.6
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 4.5e-14 81.6 98 54.1
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 5.9e-14 81.3 78 57.7
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 7.7e-14 80.9 78 60.3
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 7.7e-14 80.9 89 55.1
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.3e-13 80.1 100 51.0
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.3e-13 80.1 98 53.1
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 1.7e-13 79.7 110 45.5
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.7e-13 79.7 105 45.7
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 1.7e-13 79.7 100 45.0
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 2.9e-13 79.0 80 60.0
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.9e-13 79.0 119 49.6
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 2.9e-13 79.0 63 60.3
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 2.9e-13 79.0 65 64.6
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 2.9e-13 79.0 59 64.4
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 2.9e-13 79.0 50 78.0
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 5.0e-13 78.2 72 59.7
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 5.0e-13 78.2 49 79.6
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 5.0e-13 78.2 49 79.6
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 6.5e-13 77.8 75 61.3
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 8.5e-13 77.4 86 48.8
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 8.5e-13 77.4 86 50.0
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 8.5e-13 77.4 98 52.0
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 1.1e-12 77.0 79 51.9
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 1.5e-12 76.6 77 57.1
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 1.5e-12 76.6 77 57.1
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 1.5e-12 76.6 77 57.1
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.5e-12 76.6 97 50.5
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.2e-12 75.5 86 48.8
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 3.2e-12 75.5 63 57.1
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.2e-12 75.5 60 58.3
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.4e-12 73.9 87 50.6
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.6e-11 73.2 87 43.7
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 2.1e-11 72.8 85 50.6
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 2.7e-11 72.4 47 72.3
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 8.0e-11 70.9 47 70.2
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.0e-10 70.5 70 55.7
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.0e-10 70.5 70 55.7
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.8e-10 69.7 70 52.9
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 3.0e-10 68.9 78 51.3
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 8.8e-10 67.4 56 60.7
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-09 67.0 49 71.4
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-09 67.0 48 68.8
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 3.4e-09 65.5 48 62.5
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 3.4e-09 65.5 49 71.4
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 5.7e-09 64.7 89 46.1
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 7.5e-09 64.3 48 60.4
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-08 63.2 49 69.4
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 6.3e-08 61.2 64 51.6
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 1.2e-06 57.0 34 70.6
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 3.5e-06 55.5 44 61.4
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 4.5e-06 55.1 88 37.5
ECA232G4620 Erigeron canadensis HOM05D000094 ORTHO05D002350 7.7e-06 54.3 62 48.4


User provided reference genes

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