Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.2e-115 419.9 205 100.0
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.5e-115 419.5 204 100.0
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 5.8e-115 417.5 205 99.5
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.0e-108 394.8 204 94.1
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.0e-99 365.9 200 89.0
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 7.6e-91 337.4 203 82.3
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 5.8e-83 311.2 201 76.6
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 6.0e-80 301.2 189 76.2
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 2.3e-79 299.3 187 75.9
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 6.7e-79 297.7 196 74.5
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.5e-78 296.6 204 72.1
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 2.5e-78 295.8 203 70.9
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.6e-77 293.1 192 71.4
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 2.1e-77 292.7 193 72.5
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 2.1e-77 292.7 190 73.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 3.6e-77 292.0 204 68.6
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 4.0e-76 288.5 188 73.9
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 6.9e-76 287.7 182 74.7
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 9.0e-76 287.3 179 76.0
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.2e-75 287.0 208 70.7
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.5e-75 286.6 188 72.9
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.0e-75 286.2 195 70.8
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 2.6e-75 285.8 208 68.3
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 4.5e-75 285.0 199 69.3
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 5.8e-75 284.6 179 73.7
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 1.7e-74 283.1 196 70.4
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 2.9e-74 282.3 204 68.6
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 3.8e-74 282.0 207 68.1
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.9e-74 281.6 205 69.8
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 4.9e-74 281.6 194 69.1
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 8.4e-74 280.8 197 68.0
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 8.4e-74 280.8 197 68.0
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.1e-73 280.4 198 67.2
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.4e-73 280.0 191 69.6
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.4e-73 280.0 191 69.6
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 1.4e-73 280.0 194 69.6
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.4e-73 280.0 193 68.9
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 1.4e-73 280.0 178 73.0
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.9e-73 279.6 179 73.7
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.9e-73 279.6 178 75.8
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.4e-73 279.3 192 69.3
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 2.4e-73 279.3 199 66.8
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 2.4e-73 279.3 193 68.9
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 3.2e-73 278.9 172 76.2
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 3.2e-73 278.9 197 70.1
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 3.2e-73 278.9 177 72.9
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 5.5e-73 278.1 191 71.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 5.5e-73 278.1 177 72.3
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 7.1e-73 277.7 178 73.6
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 7.1e-73 277.7 198 67.2
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 7.1e-73 277.7 189 71.4
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 9.3e-73 277.3 206 66.5
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 9.3e-73 277.3 198 67.2
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.2e-72 276.9 203 67.0
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.6e-72 276.6 205 65.4
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 2.1e-72 276.2 190 69.5
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 3.5e-72 275.4 203 65.0
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.0e-71 273.9 191 68.6
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.3e-71 273.5 192 67.7
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.3e-71 272.7 204 64.7
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 3.9e-71 271.9 193 68.4
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 5.1e-71 271.6 195 69.2
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 6.7e-71 271.2 193 66.8
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 8.7e-71 270.8 170 72.4
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 8.7e-71 270.8 190 66.8
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.1e-70 270.4 192 66.7
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.5e-70 270.0 206 65.0
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 1.9e-70 269.6 203 64.5
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.5e-70 269.2 214 62.6
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.5e-70 269.2 214 62.6
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.3e-70 268.9 204 64.7
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 3.3e-70 268.9 201 66.2
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 4.3e-70 268.5 165 77.6
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 4.3e-70 268.5 201 65.2
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.6e-70 268.1 192 66.1
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 7.4e-70 267.7 207 65.2
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 7.4e-70 267.7 203 63.1
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 7.4e-70 267.7 205 66.3
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 9.6e-70 267.3 205 66.3
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.3e-69 266.9 192 65.6
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.6e-69 266.5 176 71.6
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.1e-69 266.2 165 74.5
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.8e-69 265.8 190 66.8
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.8e-69 265.0 190 67.4
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 8.1e-69 264.2 191 66.0
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.1e-69 264.2 190 66.3
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.1e-68 263.8 166 74.7
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.1e-68 263.8 179 69.3
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.4e-68 262.7 205 62.4
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.1e-68 262.3 179 69.3
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 4.0e-68 261.9 193 64.8
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.2e-67 260.4 311 50.2
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 1.5e-67 260.0 170 67.6
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 4.5e-67 258.5 172 67.4
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.2e-66 256.1 166 67.5
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 3.8e-66 255.4 196 60.7
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.1e-65 253.8 195 64.6
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 3.2e-65 252.3 197 64.0
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 1.2e-64 250.4 169 71.6
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 2.1e-64 249.6 168 70.8
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.7e-64 249.2 178 68.0
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 6.0e-64 248.1 203 59.6
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 6.0e-64 248.1 186 61.3
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.3e-63 246.9 170 71.2
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 1.8e-63 246.5 198 64.1
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 6.7e-63 244.6 175 67.4
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 2.5e-62 242.7 168 67.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.3e-62 241.9 202 62.4
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 5.7e-62 241.5 154 74.0
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.8e-61 239.2 208 60.1
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 5.3e-60 235.0 199 60.3
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 7.6e-59 231.1 147 71.4
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 1.0e-58 230.7 193 62.2
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 2.2e-58 229.6 192 60.4
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 2.9e-58 229.2 192 60.4
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 2.9e-58 229.2 192 60.4
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 6.3e-53 211.5 161 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 8.2e-53 211.1 176 58.0
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 2.0e-51 206.5 129 72.9
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 2.6e-51 206.1 138 71.7
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 1.3e-50 203.8 164 59.1
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 5.0e-50 201.8 194 51.5
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 2.1e-48 196.4 145 70.3
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 8.8e-47 191.0 158 63.3
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 2.8e-45 186.0 184 49.5
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 9.4e-41 171.0 175 47.4
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.2e-35 154.1 169 43.8
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.2e-32 144.1 169 47.3
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.7e-32 142.9 159 44.0
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.2e-30 137.5 182 41.2
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.6e-30 136.3 201 41.3
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.7e-26 123.6 169 42.6
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 2.9e-26 122.9 189 33.9
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 3.8e-26 122.5 79 68.4
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.4e-20 103.2 167 37.1
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 5.5e-17 92.0 63 58.7
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 9.8e-14 81.3 62 61.3
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.3e-13 80.9 62 66.1
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.5e-09 67.4 47 72.3
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 4.7e-08 62.4 57 52.6


User provided reference genes

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