Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 3.2e-162 575.1 302 100.0
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.2e-162 575.1 302 100.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.2e-162 575.1 302 100.0
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.8e-156 554.3 302 94.0
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.6e-151 537.0 302 92.1
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.7e-145 518.8 307 89.9
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 3.8e-131 471.9 300 78.0
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 6.7e-128 461.1 305 78.4
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.9e-120 435.3 298 73.5
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 6.5e-115 417.9 298 69.8
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.1e-112 408.3 294 70.4
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.6e-111 406.0 253 76.7
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 5.7e-111 404.8 305 67.2
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.2e-110 402.9 303 66.3
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 6.3e-110 401.4 253 75.9
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.4e-109 400.2 304 67.4
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.1e-109 398.7 310 65.2
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.2e-108 397.1 304 67.4
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.6e-108 396.0 304 66.4
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.6e-108 396.0 315 66.7
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.9e-108 394.8 300 66.7
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.2e-107 392.9 305 65.9
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.2e-107 392.9 311 63.3
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 6.5e-107 391.3 254 75.6
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 4.2e-106 388.7 303 66.7
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.5e-106 388.3 298 64.4
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 7.2e-106 387.9 301 65.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 9.4e-106 387.5 300 64.3
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.1e-105 386.3 298 64.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.1e-105 386.3 302 63.6
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 2.1e-105 386.3 254 73.6
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.7e-105 386.0 284 66.5
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.7e-105 385.2 300 62.7
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 6.1e-105 384.8 307 65.8
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.5e-103 380.2 302 62.9
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 2.6e-103 379.4 305 63.0
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 5.7e-103 378.3 300 62.0
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.7e-102 375.6 295 63.1
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.4e-101 372.9 294 63.6
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 9.1e-101 370.9 297 62.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 3.5e-100 369.0 253 69.2
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.0e-99 367.5 298 62.1
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.7e-99 366.7 298 61.7
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.9e-99 365.9 292 62.0
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 2.9e-99 365.9 298 62.4
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 6.5e-99 364.8 297 60.9
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 6.5e-99 364.8 298 61.4
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 7.2e-98 361.3 255 66.7
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-97 359.8 195 93.8
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.4e-96 357.1 278 62.6
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.0e-96 355.5 264 64.4
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.2e-96 355.1 269 64.7
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.2e-96 355.1 300 59.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.2e-96 355.1 300 59.3
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.5e-95 353.6 299 59.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 2.6e-95 352.8 296 59.8
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.6e-95 352.8 288 61.5
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 3.4e-95 352.4 299 59.2
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 3.4e-95 352.4 298 59.4
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.7e-95 351.7 278 63.3
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 9.8e-95 350.9 258 64.7
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.7e-94 350.1 299 58.9
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.2e-94 349.7 298 59.7
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.2e-94 349.7 298 59.4
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 3.7e-94 349.0 257 65.4
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.7e-94 349.0 298 59.4
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.8e-94 348.6 253 64.8
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.8e-94 348.6 259 65.3
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.3e-94 347.8 298 59.4
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-93 347.4 298 59.4
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.8e-93 346.7 261 64.0
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 5.4e-93 345.1 253 64.0
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 7.0e-93 344.7 252 67.5
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.0e-92 343.2 264 61.7
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.7e-92 341.3 299 58.2
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-91 340.5 298 56.4
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.3e-91 340.5 298 56.4
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.7e-91 340.1 299 58.5
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.7e-91 340.1 297 58.6
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 8.5e-91 337.8 295 57.6
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 8.5e-91 337.8 253 66.0
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-90 337.0 296 56.4
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.2e-90 335.9 299 57.5
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.2e-90 335.9 265 62.6
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 3.2e-90 335.9 252 67.9
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.5e-90 335.1 299 57.9
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.2e-89 334.0 253 62.1
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 3.6e-89 332.4 298 57.0
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.1e-89 331.6 263 61.2
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 5.7e-87 325.1 252 60.7
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 4.1e-85 318.9 255 62.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 9.1e-85 317.8 257 59.9
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.6e-84 317.0 260 59.2
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 2.0e-84 316.6 257 59.9
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.7e-84 316.2 298 56.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.5e-84 315.5 257 61.5
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 4.5e-84 315.5 257 59.1
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 2.3e-83 313.2 297 56.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.9e-83 312.8 290 56.6
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.0e-83 312.0 248 59.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 8.6e-83 311.2 261 57.5
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.1e-82 310.8 253 62.5
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.9e-82 310.1 251 60.6
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.9e-82 310.1 305 54.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.8e-81 306.2 254 61.4
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 5.2e-80 302.0 290 54.1
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.7e-78 297.0 295 51.9
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.2e-78 296.6 295 51.9
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.4e-77 293.9 282 50.0
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.4e-77 293.1 209 67.0
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.7e-76 289.7 263 51.7
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.7e-76 289.7 289 48.4
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.3e-74 282.7 252 53.2
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.8e-72 276.9 300 55.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 3.5e-68 262.7 228 57.0
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 4.6e-68 262.3 279 48.7
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 6.6e-67 258.5 251 47.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.1e-66 257.7 224 57.6
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 7.3e-66 255.0 270 49.3
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.1e-64 251.1 240 48.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 7.1e-61 238.4 247 49.8
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 6.0e-60 235.3 244 50.8
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.9e-54 216.5 238 42.9
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.9e-53 213.8 110 97.3
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 9.6e-50 201.4 251 43.0
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 6.2e-49 198.7 251 42.6
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 3.2e-45 186.4 117 76.1
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.1e-40 171.4 249 39.4
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.5e-39 167.5 253 38.7
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.9e-38 163.3 238 40.8
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 6.4e-38 162.2 246 35.4
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.0e-35 153.3 209 38.8
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 8.7e-35 151.8 129 55.8
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.7e-30 137.5 144 55.6
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-28 131.3 236 35.6
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 7.9e-28 128.6 124 53.2
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.3e-26 123.2 120 52.5
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.8e-25 119.4 230 33.5
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.4e-21 107.8 99 51.5
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 7.9e-20 102.1 170 32.9
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.3e-19 101.3 283 28.6
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.4e-16 90.5 285 26.3
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 5.3e-16 89.4 225 29.3
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 3.4e-15 86.7 227 28.2
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 3.7e-09 66.6 122 36.9


User provided reference genes

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