Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0869 Fragaria x ananassa HOM05D008730 ORTHO05D010922 4.1e-154 548.5 387 100.0
FAN02G3283 Fragaria x ananassa HOM05D008730 ORTHO05D008859 3.6e-118 429.1 340 87.6
FvH4_6g11721 Fragaria vesca HOM05D008730 ORTHO05D010922 2.1e-89 333.6 261 91.6
FAN14G1945 Fragaria x ananassa HOM05D008730 ORTHO05D010922 2.1e-89 333.6 261 99.2
FAN05G3712 Fragaria x ananassa HOM05D008730 ORTHO05D010922 1.9e-82 310.5 261 88.9
FAN09G0720 Fragaria x ananassa HOM05D008730 ORTHO05D010922 1.5e-79 300.8 261 81.2
RcHm_v2.0_Chr3g0463501 Rosa chinensis HOM05D008730 ORTHO05D010922 3.1e-69 266.5 142 90.8
Prupe.6G274600 Prunus persica HOM05D008730 ORTHO05D010922 3.0e-56 223.4 143 76.2
MD12G1164100 Malus domestica HOM05D008730 ORTHO05D010922 3.6e-49 199.9 141 70.2
FAN14G1367 Fragaria x ananassa HOM05D007113 ORTHO05D008859 1.0e-43 181.8 109 88.1
FAN09G0121 Fragaria x ananassa HOM05D007113 ORTHO05D008859 1.3e-43 181.4 109 87.2
FAN05G2893 Fragaria x ananassa HOM05D007113 ORTHO05D008859 8.5e-43 178.7 109 86.2
RcHm_v2.0_Chr3g0463511 Rosa chinensis HOM05D007113 ORTHO05D008859 2.5e-42 177.2 109 89.9
FvH4_6g11730 Fragaria vesca HOM05D007113 ORTHO05D008859 4.2e-42 176.4 109 86.2
Cfa017229 Carpinus fangiana HOM05D008730 ORTHO05D010922 5.2e-40 169.5 142 57.7
Thecc.05G019000 Theobroma cacao HOM05D008730 ORTHO05D010922 5.7e-39 166.0 143 59.4
MD12G1164000 Malus domestica HOM05D007113 ORTHO05D008859 6.3e-38 162.5 109 76.1
Haze_20977 Corylus avellana HOM05D008730 ORTHO05D010922 1.1e-37 161.8 141 57.4
MD04G1149600 Malus domestica HOM05D007113 ORTHO05D008859 2.4e-37 160.6 109 76.1
CiPaw.10G155800 Carya illinoinensis HOM05D008730 ORTHO05D010922 2.0e-36 157.5 141 58.9
Ciclev10013688m.g Citrus clementina HOM05D008730 ORTHO05D010922 6.5e-35 152.5 143 58.0
Psat3g130400 Pisum sativum HOM05D008730 ORTHO05D010922 6.5e-35 152.5 142 54.9
Glyma.07G147500 Glycine max HOM05D008730 ORTHO05D010922 1.9e-34 151.0 135 54.8
VMungo1383G2265 Vigna mungo HOM05D008730 ORTHO05D010922 3.2e-34 150.2 142 53.5
Glyma.18G198600 Glycine max HOM05D008730 ORTHO05D010922 7.2e-34 149.1 134 55.2
TPR.G32773 Trifolium pratense HOM05D008730 ORTHO05D010922 2.1e-33 147.5 142 52.8
CANSAT35G0395 Cannabis sativa HOM05D007113 ORTHO05D008859 4.7e-33 146.4 114 70.2
Hma1.2p1_0362F.1_g136070 Hydrangea macrophylla HOM05D008730 ORTHO05D010922 6.1e-33 146.0 150 55.3
Medtr7g067500 Medicago truncatula HOM05D008730 ORTHO05D010922 6.1e-33 146.0 142 52.8
Lj1g0001006 Lotus japonicus HOM05D008730 ORTHO05D010922 1.8e-32 144.4 144 54.2
Phvul.008G105800 Phaseolus vulgaris HOM05D008730 ORTHO05D010922 6.8e-32 142.5 142 52.1
TPR.G8135 Trifolium pratense HOM05D008730 ORTHO05D010922 1.5e-31 141.4 142 52.8
GSVIVG01033979001 Vitis vinifera HOM05D007113 ORTHO05D008859 2.6e-31 140.6 111 64.0
Haze_20976 Corylus avellana HOM05D007113 ORTHO05D008859 3.4e-31 140.2 109 66.1
Aqoxy2G00930 Aquilegia oxysepala HOM05D008730 ORTHO05D010922 5.7e-31 139.4 144 50.0
Hma1.2p1_0362F.1_g136060 Hydrangea macrophylla HOM05D007113 ORTHO05D008859 9.7e-31 138.7 111 63.1
Atru.chr8.2218 Acer truncatum HOM05D008730 ORTHO05D010922 3.7e-30 136.7 144 53.5
Gorai.002G262200 Gossypium raimondii HOM05D007113 ORTHO05D008859 8.3e-30 135.6 113 63.7
Nn8g40109 Nelumbo nucifera HOM05D007113 ORTHO05D008859 1.4e-29 134.8 111 60.4
Dinv34405 Davidia involucrata HOM05D007113 ORTHO05D008859 1.8e-29 134.4 111 63.1
Gohir.A01G226400 Gossypium hirsutum HOM05D007113 ORTHO05D008859 1.8e-29 134.4 113 62.8
Cfa017230 Carpinus fangiana HOM05D007113 ORTHO05D008859 3.1e-29 133.7 109 75.2
ClCG04G007080 Citrullus lanatus HOM05D008730 ORTHO05D010922 3.1e-29 133.7 144 54.2
Duzib093G1147 Durio zibethinus HOM05D007113 ORTHO05D008859 4.1e-29 133.3 113 69.9
Gohir.D01G216000 Gossypium hirsutum HOM05D007113 ORTHO05D008859 7.0e-29 132.5 113 62.8
DCAR_018712 Daucus carota HOM05D008730 ORTHO05D010922 9.1e-29 132.1 143 52.4
Thecc.05G019300 Theobroma cacao HOM05D007113 ORTHO05D008859 2.0e-28 131.0 113 67.3
Gohir.A09G164300 Gossypium hirsutum HOM05D008730 ORTHO05D010922 3.5e-28 130.2 140 53.6
Gohir.D09G159900 Gossypium hirsutum HOM05D008730 ORTHO05D010922 4.5e-28 129.8 137 54.0
Gorai.006G181500 Gossypium raimondii HOM05D008730 ORTHO05D010922 4.5e-28 129.8 137 54.0
PGR004G1045 Punica granatum HOM05D007113 ORTHO05D008859 1.0e-27 128.6 111 61.3
Sed0022931 Sechium edule HOM05D008730 ORTHO05D010922 2.2e-27 127.5 144 52.1
Oeu028599.1 Olea europaea HOM05D007113 ORTHO05D008859 2.5e-26 124.0 115 57.4
Potri.016G113700 Populus trichocarpa HOM05D007113 ORTHO05D008859 7.2e-26 122.5 111 61.3
MELO3C003244.2 Cucumis melo HOM05D008730 ORTHO05D010922 9.4e-26 122.1 143 49.7
TAR623G1648 Trochodendron aralioides HOM05D007113 ORTHO05D008859 9.4e-26 122.1 102 62.7
COL.COLO4_14561 Corchorus olitorius HOM05D007113 ORTHO05D008859 1.2e-25 121.7 112 59.8
CiPaw.10G155700 Carya illinoinensis HOM05D007113 ORTHO05D008859 1.6e-25 121.3 113 69.9
Eucgr.K02991 Eucalyptus grandis HOM05D007113 ORTHO05D008859 2.1e-25 120.9 116 56.9
CSS0048161 Camellia sinensis var. sinensis HOM05D007113 ORTHO05D008859 3.6e-25 120.2 113 59.3
CDE03G0108 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 3.6e-25 120.2 111 55.0
AT2G38140 Arabidopsis thaliana HOM05D007113 ORTHO05D008859 8.0e-25 119.0 109 57.8
CDE04G2391 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 8.0e-25 119.0 111 54.1
Aa31sc189G20 Aethionema arabicum HOM05D007113 ORTHO05D008859 1.0e-24 118.6 112 57.1
DCAR_028817 Daucus carota HOM05D007113 ORTHO05D008859 1.4e-24 118.2 112 58.9
Manes.08G090500 Manihot esculenta HOM05D008730 ORTHO05D010922 1.8e-24 117.9 143 46.9
CARHR132730 Cardamine hirsuta HOM05D007113 ORTHO05D008859 3.0e-24 117.1 109 56.0
A05p07890 Brassica napus HOM05D007113 ORTHO05D008859 4.0e-24 116.7 113 57.5
TWI74G0516 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 4.0e-24 116.7 113 55.8
Potri.006G098800 Populus trichocarpa HOM05D008730 ORTHO05D010922 5.2e-24 116.3 142 47.2
MELO3C003245.2 Cucumis melo HOM05D007113 ORTHO05D008859 6.8e-24 115.9 114 55.3
THA.LOC104805827 Tarenaya hassleriana HOM05D007113 ORTHO05D008859 6.8e-24 115.9 114 52.6
Migut.F01372 Erythranthe guttata HOM05D007113 ORTHO05D008859 1.2e-23 115.2 113 54.0
Atru.chr8.2216 Acer truncatum HOM05D007113 ORTHO05D008859 1.5e-23 114.8 111 56.8
Manes.08G090600 Manihot esculenta HOM05D007113 ORTHO05D008859 1.5e-23 114.8 112 67.0
ATR0618G247 Amborella trichopoda HOM05D008730 ORTHO05D010922 2.0e-23 114.4 146 49.3
C04p09540 Brassica napus HOM05D007113 ORTHO05D008859 2.6e-23 114.0 110 56.4
BolC4t22560H Brassica oleracea HOM05D007113 ORTHO05D008859 2.6e-23 114.0 110 56.4
TWI77G0060 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 3.4e-23 113.6 113 54.9
CsaV3_4G026170 Cucumis sativus L. HOM05D008730 ORTHO05D010922 5.7e-23 112.8 143 49.7
BraA05t19755Z Brassica rapa HOM05D007113 ORTHO05D008859 7.5e-23 112.5 113 55.8
ClCG04G007070 Citrullus lanatus HOM05D007113 ORTHO05D008859 7.5e-23 112.5 114 54.4
Lj3g0022517 Lotus japonicus HOM05D007113 ORTHO05D008859 1.7e-22 111.3 113 56.6
Ciclev10013049m.g Citrus clementina HOM05D007113 ORTHO05D008859 2.8e-22 110.5 104 58.7
Nitab4.5_0008493g0040 Nicotiana tabacum HOM05D007113 ORTHO05D008859 4.8e-22 109.8 112 51.8
HanXRQChr14g0460151 Helianthus annuus HOM05D007113 ORTHO05D008859 1.1e-21 108.6 113 54.9
CsaV3_4G026180 Cucumis sativus L. HOM05D007113 ORTHO05D008859 1.8e-21 107.8 113 52.2
Potri.016G114100 Populus trichocarpa HOM05D008730 ORTHO05D010922 1.8e-21 107.8 130 47.7
ECA238G3418 Erigeron canadensis HOM05D007113 ORTHO05D008859 2.4e-21 107.5 113 51.3
Nitab4.5_0000802g0080 Nicotiana tabacum HOM05D007113 ORTHO05D008859 2.4e-21 107.5 112 50.0
HPP92_019871 Vanilla planifolia HOM05D007113 ORTHO05D008859 2.4e-21 107.5 109 55.0
Haze_17209 Corylus avellana HOM05D007113 ORTHO05D008859 3.1e-21 107.1 105 56.2
PSO339G1456 Papaver somniferum HOM05D007113 ORTHO05D008859 4.1e-21 106.7 112 55.4
Prupe.6G274500 Prunus persica HOM05D007113 ORTHO05D008859 4.1e-21 106.7 83 77.1
PSO384G2929 Papaver somniferum HOM05D007113 ORTHO05D008859 5.4e-21 106.3 112 55.4
ATR0618G049 Amborella trichopoda HOM05D007113 ORTHO05D008859 7.0e-21 105.9 111 50.5
Solyc05g052710.3 Solanum lycopersicum HOM05D007113 ORTHO05D008859 7.0e-21 105.9 117 52.1
Sopen05g031230 Solanum pennellii HOM05D007113 ORTHO05D008859 9.1e-21 105.5 117 51.3
PGSC0003DMG400027129 Solanum tuberosum HOM05D007113 ORTHO05D008859 9.1e-21 105.5 117 51.3
Lsat_1_v5_gn_2_121221 Lactuca sativa HOM05D007113 ORTHO05D008859 1.6e-20 104.8 67 73.1
SalBow6G1146 Salvia bowleyana HOM05D007113 ORTHO05D008859 1.6e-20 104.8 113 50.4
vmacro06980 Vaccinium macrocarpon HOM05D007113 ORTHO05D008859 2.0e-20 104.4 112 52.7
unitig_62.g23930 Utricularia gibba HOM05D000230 ORTHO05D000176 2.7e-20 104.0 112 50.9
Lsat_1_v5_gn_9_63261 Lactuca sativa HOM05D007113 ORTHO05D008859 3.5e-20 103.6 113 54.9
Cfa017227 Carpinus fangiana HOM05D008730 ORTHO05D010922 5.9e-20 102.8 97 51.5
Cc02_g06720 Coffea canephora HOM05D007113 ORTHO05D008859 7.7e-20 102.4 114 58.8
CAN.G503.7 Capsicum annuum HOM05D007113 ORTHO05D008859 1.0e-19 102.1 118 48.3
Sed0004762 Sechium edule HOM05D007113 ORTHO05D008859 1.3e-19 101.7 112 54.5
arahy.Tifrunner.gnm1.ann1.J29A80 Arachis hypogaea HOM05D007113 ORTHO05D008859 1.7e-19 101.3 117 58.1
Glyma.03G063200 Glycine max HOM05D007113 ORTHO05D008859 2.9e-19 100.5 113 53.1
Lalb_Chr07g0193491 Lupinus albus HOM05D007113 ORTHO05D008859 2.9e-19 100.5 61 75.4
SGA_v2.0_scaffold78G25464 Striga asiatica HOM05D007113 ORTHO05D008859 3.8e-19 100.1 115 51.3
Phvul.004G171400 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 8.6e-19 99.0 113 51.3
Sc11g0007190 Simmondsia chinensis HOM05D007113 ORTHO05D008859 8.6e-19 99.0 108 51.9
Peaxi162Scf00957g00229 Petunia axillaris HOM05D011221 ORTHO05D013370 2.5e-18 97.4 106 50.0
VMungo1127G1807 Vigna mungo HOM05D007113 ORTHO05D008859 2.5e-18 97.4 114 50.9
Phvul.010G003200 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 3.3e-18 97.1 113 49.6
Oeu025646.1 Olea europaea HOM05D007113 ORTHO05D008859 4.2e-18 96.7 56 80.4
Medtr4g015540 Medicago truncatula HOM05D007113 ORTHO05D008859 5.5e-18 96.3 113 49.6
Nitab4.5_0004338g0130 Nicotiana tabacum HOM05D007113 ORTHO05D008859 7.2e-18 95.9 112 49.1
Actinidia29691 Actinidia chinensis HOM05D007113 ORTHO05D008859 9.5e-18 95.5 104 63.5
Aqoxy4G02617 Aquilegia oxysepala HOM05D007113 ORTHO05D008859 9.5e-18 95.5 109 46.8
SGA_v2.0_scaffold20G09268 Striga asiatica HOM05D007113 ORTHO05D008859 9.5e-18 95.5 60 71.7
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 2.1e-17 94.4 139 46.0
QL08p062975 Quercus lobata HOM05D007113 ORTHO05D008859 2.1e-17 94.4 108 50.9
Hund23901 Selenicereus undatus HOM05D007113 ORTHO05D008859 2.8e-17 94.0 105 53.3
Psat7g246120 Pisum sativum HOM05D007113 ORTHO05D008859 6.1e-17 92.8 109 47.7
EL10Ac2g04810 Beta vulgaris HOM05D007113 ORTHO05D008859 8.0e-17 92.4 109 48.6
Rhsim03G0141800 Rhododendron simsii HOM05D007113 ORTHO05D008859 1.0e-16 92.0 133 43.6
Glyma.01G114800 Glycine max HOM05D007113 ORTHO05D008859 1.8e-16 91.3 114 51.8
arahy.Tifrunner.gnm1.ann1.62SCQ6 Arachis hypogaea HOM05D007113 ORTHO05D008859 2.3e-16 90.9 58 74.1
Ca_20298_v3 Cicer arietinum L. HOM05D007113 ORTHO05D008859 6.8e-16 89.4 106 49.1
TPR.G13351 Trifolium pratense HOM05D007113 ORTHO05D008859 1.2e-15 88.6 64 64.1
Zm00001eb144250 Zea mays HOM05D007113 ORTHO05D008859 1.2e-15 88.6 67 61.2
Carub.0004s2011 Capsella rubella HOM05D007113 ORTHO05D008859 2.0e-15 87.8 109 45.9
Migut.J00187 Erythranthe guttata HOM05D008730 ORTHO05D010922 4.4e-15 86.7 117 43.6
AL4G35140 Arabidopsis lyrata HOM05D007113 ORTHO05D008859 7.5e-15 85.9 109 45.9
Os05g0186000 Oryza sativa ssp. japonica HOM05D007113 ORTHO05D008859 7.5e-15 85.9 65 64.6
Sp4g20460 Schrenkiella parvula HOM05D007113 ORTHO05D008859 1.7e-14 84.7 113 46.0
Ah.16g103370 Amaranthus hybridus HOM05D007113 ORTHO05D008859 2.2e-14 84.3 106 53.8
Lsat_1_v5_gn_9_33720 Lactuca sativa HOM05D008730 ORTHO05D010922 4.9e-14 83.2 140 40.7
TWI53G1153 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 1.1e-13 82.0 57 68.4
SEGI_10938 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 1.8e-13 81.3 54 68.5
SEGI_38672 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 1.8e-13 81.3 54 68.5
Thhalv10017376m.g Eutrema salsugineum HOM05D007113 ORTHO05D008859 9.2e-13 79.0 112 42.9
arahy.Tifrunner.gnm1.ann1.C0BXE8 Arachis hypogaea HOM05D007113 ORTHO05D008859 2.7e-12 77.4 58 58.6
Cpa.g.sc163.12 Carica papaya HOM05D008730 ORTHO05D010922 2.7e-12 77.4 113 44.2
MD04G1149700 Malus domestica HOM05D008730 ORTHO05D010922 5.0e-11 73.2 45 71.1
arahy.Tifrunner.gnm1.ann1.CDY6H8 Arachis hypogaea HOM05D007113 ORTHO05D008859 1.5e-10 71.6 58 55.2
AagrBONN_evm.TU.Sc2ySwM_362.1890 Anthoceros agrestis HOM05D007113 ORTHO05D008859 2.5e-10 70.9 60 58.3
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 1.6e-09 68.2 58 53.4
Sabra16G0109100 Salix brachista HOM05D007113 ORTHO05D008859 2.8e-09 67.4 112 44.6
MBI14_g41802_MAGBIO Magnolia biondii HOM05D008730 ORTHO05D010922 2.2e-06 57.8 80 38.8


User provided reference genes

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