Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.9e-187 656.8 323 100.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.3e-149 531.6 293 91.8
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.4e-147 525.8 293 90.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.0e-146 522.7 293 90.1
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.3e-133 478.8 300 83.7
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.1e-111 406.4 309 70.2
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.7e-111 405.2 322 70.2
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 7.9e-111 404.4 315 69.2
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.5e-104 383.6 256 75.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.5e-104 382.9 296 68.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 6.1e-103 378.3 248 76.2
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.0e-102 377.5 295 67.1
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.0e-102 375.6 238 78.6
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 6.7e-102 374.8 238 78.6
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 8.8e-102 374.4 278 70.1
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 9.7e-101 370.9 253 75.5
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 2.2e-100 369.8 296 68.6
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.7e-100 369.0 278 69.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 4.8e-100 368.6 236 76.7
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 8.2e-100 367.9 299 65.2
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 8.2e-100 367.9 262 72.1
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.1e-99 367.5 250 74.4
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.8e-99 366.7 238 75.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.1e-99 365.5 237 76.8
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 5.3e-99 365.2 286 68.2
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 7.0e-99 364.8 262 69.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 7.0e-99 364.8 255 72.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 9.1e-99 364.4 281 68.7
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 9.1e-99 364.4 279 68.1
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.5e-98 362.1 253 71.5
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 7.7e-98 361.3 252 72.6
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 3.8e-97 359.0 240 75.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.5e-96 357.1 255 71.4
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 7.2e-96 354.8 249 71.1
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 9.4e-96 354.4 237 74.3
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 9.4e-96 354.4 282 65.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.6e-95 353.6 254 69.3
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.1e-95 353.2 246 72.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.1e-95 353.2 236 74.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.7e-95 352.8 307 63.5
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 4.7e-95 352.1 240 74.2
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 4.7e-95 352.1 240 74.2
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 4.7e-95 352.1 240 74.2
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 4.7e-95 352.1 240 74.2
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 8.0e-95 351.3 304 63.2
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-94 350.9 240 74.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.8e-94 350.1 238 73.5
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.0e-94 349.4 240 73.8
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 5.2e-94 348.6 251 70.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.2e-94 348.6 238 74.4
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 5.2e-94 348.6 240 73.3
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 2.0e-93 346.7 275 66.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.0e-93 346.7 240 72.5
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.6e-93 346.3 240 72.9
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 4.4e-93 345.5 304 62.2
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 5.7e-93 345.1 240 72.9
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 5.7e-93 345.1 240 72.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 5.7e-93 345.1 240 71.2
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 5.7e-93 345.1 249 72.3
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 7.5e-93 344.7 235 73.2
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.5e-93 344.7 240 72.5
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.5e-93 344.7 240 72.5
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 7.5e-93 344.7 240 72.5
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.7e-92 343.6 255 69.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.7e-92 343.6 277 65.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.8e-92 342.0 277 65.3
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 6.3e-92 341.7 251 68.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 6.3e-92 341.7 249 70.3
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 8.3e-92 341.3 241 71.0
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 8.3e-92 341.3 241 71.0
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.4e-91 340.5 254 68.1
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.1e-91 339.3 238 71.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.1e-91 339.0 258 68.2
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 5.4e-91 338.6 251 68.1
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 7.0e-91 338.2 251 70.5
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.2e-90 337.4 239 70.3
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.6e-90 337.0 251 67.3
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.6e-90 337.0 247 71.3
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.6e-90 337.0 238 71.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.0e-90 336.7 239 71.1
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-90 336.7 295 60.3
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 2.7e-90 336.3 295 62.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.5e-90 335.9 236 71.2
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.5e-90 335.5 257 66.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.7e-89 333.6 239 68.6
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.7e-89 333.6 254 65.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.3e-89 333.2 250 67.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 6.5e-89 331.6 232 71.1
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 8.6e-89 331.3 299 60.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.1e-88 330.9 253 67.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-88 330.1 241 71.4
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-88 330.1 241 71.4
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 5.5e-88 328.6 241 71.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 9.5e-88 327.8 241 70.5
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.5e-88 327.8 249 67.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.2e-87 327.4 235 68.9
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.1e-87 326.6 243 67.1
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.7e-87 325.5 267 64.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.7e-87 325.5 250 67.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 6.1e-87 325.1 232 69.8
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-86 323.9 241 70.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.8e-86 323.6 250 68.0
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.0e-86 322.4 250 67.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 5.2e-86 322.0 256 64.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 6.8e-86 321.6 241 69.7
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 8.9e-86 321.2 249 65.5
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 8.9e-86 321.2 251 66.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 8.9e-86 321.2 261 64.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.5e-85 320.5 246 66.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.2e-84 316.6 247 66.0
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.7e-84 315.8 240 67.5
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.9e-84 315.5 210 73.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.3e-84 315.1 258 64.7
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.1e-83 314.3 249 64.7
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.4e-83 313.9 240 67.1
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.4e-83 313.9 240 67.1
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.4e-83 313.2 256 64.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 7.0e-83 311.6 251 64.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.2e-82 310.8 237 66.2
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.2e-82 310.8 242 65.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.7e-82 309.7 252 62.7
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.5e-82 309.3 259 63.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 3.5e-82 309.3 258 62.8
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.8e-81 305.8 235 65.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.8e-81 305.8 237 67.1
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.9e-80 303.5 247 61.9
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.5e-80 303.1 253 63.2
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 3.3e-80 302.8 238 65.1
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 5.6e-80 302.0 247 61.9
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.1e-79 300.1 253 62.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.4e-78 297.4 294 56.8
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 4.0e-78 295.8 238 63.9
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-77 293.9 238 63.0
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.5e-77 293.9 238 63.0
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-77 292.7 238 62.6
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 3.4e-77 292.7 238 62.6
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 3.4e-77 292.7 238 62.6
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.4e-77 292.4 244 64.3
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 5.4e-75 285.4 201 72.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 7.0e-75 285.0 227 66.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.6e-74 283.9 216 66.7
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 5.0e-73 278.9 240 61.7
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.7e-68 263.8 258 57.4
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 9.5e-64 248.1 229 58.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 9.5e-64 248.1 149 81.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.8e-63 246.5 149 81.2
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.1e-63 245.0 238 55.5
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 4.9e-60 235.7 251 52.2
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.4e-59 234.2 263 52.5
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 6.0e-58 228.8 132 85.6
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 9.5e-56 221.5 226 53.5
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-51 207.6 248 48.0
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.3e-48 196.1 251 46.2
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.2e-42 177.9 277 39.4
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 4.8e-39 166.0 198 49.5
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.9e-36 156.0 163 52.1
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.1e-35 152.1 191 41.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.3e-30 136.0 89 77.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 2.4e-27 127.1 113 55.8
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-16 91.7 74 55.4
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.6e-10 71.2 67 52.2
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.8e-09 67.8 65 52.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.0e-09 67.0 81 49.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.5e-08 64.7 71 50.7
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.5e-08 64.7 63 57.1
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 4.3e-08 63.2 113 35.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.7e-07 61.2 40 70.0


User provided reference genes

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