Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.3e-201 706.8 541 100.0
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.2e-175 620.5 620 78.5
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 3.6e-172 609.0 620 82.6
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-168 597.0 613 79.4
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-163 580.5 621 81.0
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.0e-162 576.6 621 80.7
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 4.6e-127 459.1 630 64.6
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 4.6e-87 326.2 632 47.6
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 3.7e-60 236.9 640 34.4
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.4e-59 235.0 604 41.1
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 3.4e-58 230.3 600 35.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 2.7e-55 220.7 589 48.0
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 2.6e-50 204.1 640 36.7
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 4.8e-44 183.3 651 30.4
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 4.8e-44 183.3 614 45.3
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.5e-40 171.8 561 30.1
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 9.7e-37 159.1 590 27.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.1e-35 155.6 583 29.2
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.1e-35 155.6 631 33.6
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.4e-35 155.2 620 26.5
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.8e-35 154.8 163 53.4
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 5.3e-35 153.3 630 30.6
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 2.0e-34 151.4 590 29.7
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 5.9e-34 149.8 750 39.5
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.3e-33 148.7 588 26.9
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.6e-31 141.7 626 27.2
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.6e-31 140.6 661 33.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 4.7e-31 140.2 619 24.2
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.4e-30 138.7 631 26.8
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.8e-30 138.3 642 25.5
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.4e-29 134.0 595 24.4
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 3.4e-29 134.0 621 25.1
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 9.8e-29 132.5 546 25.1
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 1.3e-28 132.1 590 25.9
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 4.8e-28 130.2 586 24.7
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.8e-27 128.3 603 27.9
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.4e-27 127.9 586 29.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.1e-27 127.5 577 27.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 2.0e-26 124.8 621 34.1
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 4.5e-26 123.6 656 30.2
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 5.9e-26 123.2 628 28.2
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.9e-26 123.2 656 30.2
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 5.9e-26 123.2 637 24.2
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.0e-25 122.5 595 26.9
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 3.8e-25 120.6 627 26.0
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 2.5e-24 117.9 592 25.0
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 7.2e-24 116.3 662 36.4
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 7.2e-24 116.3 539 25.4
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 3.6e-23 114.0 160 44.4
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.8e-22 111.7 643 23.6
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.8e-22 111.7 584 26.4
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 4.0e-22 110.5 576 24.5
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 7.5e-21 106.3 586 22.9
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.2e-20 104.8 635 28.3
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 3.7e-20 104.0 653 23.3
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 8.3e-20 102.8 638 33.1
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.1e-19 102.4 161 40.4
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.4e-19 102.1 512 26.0
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.4e-19 102.1 187 35.8
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.4e-19 102.1 163 42.3
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.8e-19 101.7 136 41.9
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.4e-19 101.3 599 22.5
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 3.1e-19 100.9 162 42.6
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 3.1e-19 100.9 557 31.6
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 4.1e-19 100.5 159 43.4
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 9.2e-19 99.4 585 31.8
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.2e-18 99.0 160 38.1
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.2e-18 99.0 587 28.6
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 3.5e-18 97.4 631 30.4
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 5.9e-18 96.7 161 37.3
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 7.8e-18 96.3 640 33.8
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 7.8e-18 96.3 584 32.0
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 7.8e-18 96.3 156 42.9
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.0e-17 93.6 610 34.1
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 1.1e-16 92.4 306 31.4
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.5e-16 92.0 611 34.0
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 2.5e-16 91.3 158 37.3
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-16 91.3 560 30.5
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.5e-16 91.3 560 30.5
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.3e-16 90.9 644 22.4
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.3e-16 90.9 158 38.0
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 5.6e-16 90.1 130 41.5
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 7.3e-16 89.7 605 25.5
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.2e-15 89.0 553 31.5
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.2e-15 89.0 138 39.9
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.6e-15 88.6 714 20.9
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 3.6e-15 87.4 144 34.0
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.6e-15 87.4 590 23.2
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.0e-14 85.9 137 39.4
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.4e-14 85.5 640 32.7
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.3e-14 84.7 227 26.9
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 5.2e-14 83.6 644 22.7
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 5.2e-14 83.6 639 24.1
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 8.9e-14 82.8 660 26.8
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 2.6e-13 81.3 569 25.5
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.4e-13 80.9 137 37.2
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 4.4e-13 80.5 636 34.7
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.3e-12 79.0 579 24.4
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 1.3e-12 79.0 133 32.3
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.2e-12 78.2 597 24.6
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.9e-12 77.8 717 22.3
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.9e-12 77.8 167 33.5
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 4.9e-12 77.0 579 35.9
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 4.1e-11 73.9 391 23.0
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.6e-10 72.0 629 22.7
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 4.6e-10 70.5 183 30.6
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 6.0e-10 70.1 151 31.1
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 6.0e-10 70.1 151 31.1
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.3e-09 68.2 114 38.6
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 2.3e-09 68.2 256 30.9
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 3.9e-09 67.4 591 33.5
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.5e-08 65.5 145 31.0
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 1.9e-08 65.1 153 32.0
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 3.3e-08 64.3 673 25.4
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 3.3e-08 64.3 116 33.6
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 5.6e-08 63.5 280 28.9
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 2.1e-07 61.6 595 24.4
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.1e-07 61.6 508 34.3
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.8e-07 61.2 504 20.0
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.7e-07 60.5 225 25.8
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 1.8e-06 58.5 544 34.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.3e-06 58.2 46 58.7
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.1e-06 57.8 163 28.2
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.1e-06 57.8 113 38.1
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 4.0e-06 57.4 71 39.4


User provided reference genes

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