Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.3e-58 228.8 125 100.0
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 3.0e-58 228.4 125 98.4
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 3.6e-51 204.9 125 85.6
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.4e-50 203.0 125 86.4
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.2e-49 199.9 125 84.0
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 4.1e-31 138.3 126 65.1
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 9.2e-31 137.1 122 67.2
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 1.3e-29 133.3 126 63.5
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 2.5e-28 129.0 91 70.3
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 6.1e-27 124.4 126 56.3
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 6.1e-27 124.4 94 64.9
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 3.0e-26 122.1 126 57.9
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 6.8e-26 120.9 121 58.7
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 2.0e-25 119.4 125 56.0
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 3.4e-25 118.6 99 58.6
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 3.4e-25 118.6 126 57.1
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 3.4e-25 118.6 125 54.4
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 4.4e-25 118.2 125 56.8
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 5.8e-25 117.9 93 65.6
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 9.8e-25 117.1 125 54.4
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 9.8e-25 117.1 127 53.5
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 1.7e-24 116.3 96 63.5
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 1.7e-24 116.3 126 56.3
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 1.7e-24 116.3 98 63.3
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 2.2e-24 115.9 100 56.0
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 2.9e-24 115.5 125 55.2
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 3.7e-24 115.2 101 61.4
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 4.9e-24 114.8 103 62.1
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 4.9e-24 114.8 84 70.2
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 6.4e-24 114.4 105 55.2
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 6.4e-24 114.4 96 60.4
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 8.3e-24 114.0 122 54.9
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 8.3e-24 114.0 125 54.4
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 8.3e-24 114.0 125 54.4
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 1.4e-23 113.2 90 65.6
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 2.4e-23 112.5 93 60.2
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 2.4e-23 112.5 110 57.3
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 4.1e-23 111.7 105 54.3
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 4.1e-23 111.7 96 58.3
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 4.1e-23 111.7 94 62.8
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 7.0e-23 110.9 96 60.4
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 7.0e-23 110.9 97 58.8
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 9.2e-23 110.5 83 65.1
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 1.6e-22 109.8 95 55.8
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.6e-22 109.8 111 50.5
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 1.6e-22 109.8 84 67.9
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.6e-22 109.8 105 60.0
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 2.0e-22 109.4 83 66.3
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 2.7e-22 109.0 93 57.0
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 2.7e-22 109.0 93 57.0
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 2.7e-22 109.0 93 57.0
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.7e-22 109.0 93 63.4
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 3.5e-22 108.6 94 57.4
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 3.5e-22 108.6 96 57.3
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 4.6e-22 108.2 96 56.2
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 4.6e-22 108.2 96 56.2
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 4.6e-22 108.2 92 56.5
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 4.6e-22 108.2 83 66.3
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 6.0e-22 107.8 103 51.5
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 6.0e-22 107.8 96 57.3
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.0e-22 107.8 85 65.9
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 7.8e-22 107.5 97 54.6
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 7.8e-22 107.5 125 51.2
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 7.8e-22 107.5 125 53.6
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 7.8e-22 107.5 102 57.8
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 1.0e-21 107.1 103 53.4
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 1.0e-21 107.1 125 52.8
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 1.3e-21 106.7 86 61.6
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 1.7e-21 106.3 82 65.9
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 3.0e-21 105.5 117 49.6
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 3.9e-21 105.1 97 54.6
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 6.6e-21 104.4 88 59.1
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 6.6e-21 104.4 109 53.2
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 6.6e-21 104.4 84 66.7
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 6.6e-21 104.4 103 58.3
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 8.6e-21 104.0 91 56.0
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 8.6e-21 104.0 87 63.2
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 8.6e-21 104.0 107 55.1
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.1e-20 103.6 105 51.4
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 1.5e-20 103.2 104 52.9
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.9e-20 102.8 90 60.0
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 1.9e-20 102.8 83 61.4
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.9e-20 102.8 89 57.3
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 2.5e-20 102.4 84 64.3
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 3.3e-20 102.1 72 68.1
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 3.3e-20 102.1 90 58.9
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 3.3e-20 102.1 82 65.9
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 3.3e-20 102.1 82 65.9
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 5.6e-20 101.3 104 50.0
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 7.3e-20 100.9 90 61.1
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 7.3e-20 100.9 89 58.4
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 7.3e-20 100.9 125 51.2
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 9.5e-20 100.5 104 50.0
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.2e-19 100.1 118 50.8
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 1.6e-19 99.8 99 57.6
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 1.6e-19 99.8 85 61.2
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 2.1e-19 99.4 97 54.6
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.1e-19 99.4 74 64.9
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 2.1e-19 99.4 93 55.9
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 2.8e-19 99.0 118 49.2
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 2.8e-19 99.0 84 60.7
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 2.8e-19 99.0 104 49.0
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 3.6e-19 98.6 88 54.5
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 4.7e-19 98.2 101 52.5
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 4.7e-19 98.2 102 50.0
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 6.2e-19 97.8 94 58.5
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 1.1e-18 97.1 81 60.5
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 1.4e-18 96.7 132 47.0
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 2.3e-18 95.9 90 55.6
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.3e-18 95.9 102 49.0
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 3.1e-18 95.5 78 61.5
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 5.2e-18 94.7 70 64.3
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.8e-18 94.4 70 64.3
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 6.8e-18 94.4 95 52.6
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.6e-17 92.4 98 51.0
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 7.5e-17 90.9 89 52.8
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 2.9e-16 89.0 90 50.0
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 8.3e-16 87.4 93 50.5
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 4.1e-15 85.1 62 64.5
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 1.6e-14 83.2 94 48.9
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 7.8e-14 80.9 58 67.2
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.3e-13 79.3 71 53.5
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 3.0e-13 79.0 62 59.7
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 1.8e-10 69.7 80 43.8
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 1.5e-09 66.6 68 50.0
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 1.3e-08 63.5 87 35.6
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 3.5e-06 55.5 69 55.1


User provided reference genes

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