Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0728 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.3e-101 371.7 189 100.0
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 1.8e-25 120.2 61 100.0
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 1.8e-25 120.2 61 100.0
FAN05G1701 Fragaria x ananassa HOM05D003003 ORTHO05D008343 5.1e-25 118.6 61 98.4
RcHm_v2.0_Chr3g0460061 Rosa chinensis HOM05D003003 ORTHO05D008343 1.5e-24 117.1 61 96.7
FAN02G2939 Fragaria x ananassa HOM05D003003 ORTHO05D008343 1.9e-24 116.7 61 98.4
TAR633G0041 Trochodendron aralioides HOM05D003003 ORTHO05D008343 2.4e-22 109.8 60 85.0
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 4.5e-21 105.5 60 81.7
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 9.9e-21 104.4 61 80.3
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 1.3e-20 104.0 61 78.7
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 2.2e-20 103.2 60 78.3
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 2.2e-20 103.2 61 77.0
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 4.9e-20 102.1 61 77.0
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 4.9e-20 102.1 59 76.3
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 1.4e-19 100.5 61 73.8
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 1.4e-19 100.5 61 73.8
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 1.4e-19 100.5 60 76.7
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 1.4e-19 100.5 61 78.7
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 1.9e-19 100.1 61 73.8
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 3.2e-19 99.4 60 80.0
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 9.3e-19 97.8 58 79.3
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 9.3e-19 97.8 61 72.1
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 9.3e-19 97.8 60 76.7
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 1.2e-18 97.4 61 73.8
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 1.6e-18 97.1 60 76.7
CSS0024099 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 1.6e-18 97.1 60 76.7
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 2.1e-18 96.7 61 68.9
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 2.1e-18 96.7 60 78.3
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 2.1e-18 96.7 58 75.9
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 2.7e-18 96.3 60 78.3
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 2.7e-18 96.3 60 80.0
Hma1.2p1_0174F.1_g076690 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 2.7e-18 96.3 60 80.0
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 2.7e-18 96.3 61 70.5
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 4.6e-18 95.5 61 70.5
Rhsim04G0150500 Rhododendron simsii HOM05D003003 ORTHO05D008343 7.9e-18 94.7 62 71.0
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 7.9e-18 94.7 61 78.7
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.0e-17 94.4 61 75.4
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.0e-17 94.4 60 75.0
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 1.0e-17 94.4 60 76.7
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 1.0e-17 94.4 58 77.6
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 1.0e-17 94.4 58 77.6
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 1.3e-17 94.0 60 71.7
Actinidia11485 Actinidia chinensis HOM05D000166 ORTHO05D001348 1.8e-17 93.6 58 70.7
Cfa017002 Carpinus fangiana HOM05D003003 ORTHO05D008343 1.8e-17 93.6 61 75.4
MD04G1177200 Malus domestica HOM05D003003 ORTHO05D008343 1.8e-17 93.6 67 71.6
Sc22g0001890 Simmondsia chinensis HOM05D003003 ORTHO05D008343 1.8e-17 93.6 58 70.7
Sed0015775 Sechium edule HOM05D003003 ORTHO05D008343 2.3e-17 93.2 62 75.8
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 3.0e-17 92.8 61 70.5
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 3.9e-17 92.4 61 73.8
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 3.9e-17 92.4 63 74.6
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 5.1e-17 92.0 61 70.5
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 5.1e-17 92.0 61 68.9
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 5.1e-17 92.0 63 76.2
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 6.7e-17 91.7 61 73.8
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 8.7e-17 91.3 60 71.7
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 8.7e-17 91.3 61 65.6
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 1.1e-16 90.9 60 73.3
Lj1g0016212 Lotus japonicus HOM05D003003 ORTHO05D008343 1.1e-16 90.9 58 74.1
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 1.1e-16 90.9 62 75.8
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 1.9e-16 90.1 60 75.0
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 3.3e-16 89.4 57 75.4
Psat3g117440 Pisum sativum HOM05D003003 ORTHO05D008343 4.3e-16 89.0 59 67.8
Os05g0481000 Oryza sativa ssp. japonica HOM05D003003 ORTHO05D008343 5.6e-16 88.6 59 72.9
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 7.4e-16 88.2 61 73.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 9.6e-16 87.8 63 74.6
Aqoxy4G03302 Aquilegia oxysepala HOM05D003003 ORTHO05D008343 1.3e-15 87.4 60 66.7
MSTRG.18930 Avicennia marina HOM05D003003 ORTHO05D008343 2.8e-15 86.3 61 67.2
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 2.8e-15 86.3 61 72.1
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 3.7e-15 85.9 60 68.3
TWI74G0515 Tripterygium wilfordii HOM05D003003 ORTHO05D008343 6.2e-15 85.1 61 68.9
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 1.1e-14 84.3 63 63.5
QL07p031297 Quercus lobata HOM05D003003 ORTHO05D008343 1.1e-14 84.3 61 70.5
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 1.1e-14 84.3 61 70.5
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 1.4e-14 84.0 44 88.6
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 1.8e-14 83.6 62 67.7
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 1.8e-14 83.6 60 66.7
Thhalv10008400m.g Eutrema salsugineum HOM05D003003 ORTHO05D008343 2.4e-14 83.2 64 67.2
FAN09G1188 Fragaria x ananassa HOM05D003003 ORTHO05D008343 2.4e-14 83.2 44 95.5
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 3.1e-14 82.8 60 65.0
PSO017G2464 Papaver somniferum HOM05D003003 ORTHO05D008343 5.3e-14 82.0 60 65.0
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 6.9e-14 81.6 64 65.6
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 9.0e-14 81.3 64 65.6
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 9.0e-14 81.3 64 65.6
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 9.0e-14 81.3 64 65.6
Rhsim09G0022100 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.5e-13 80.5 48 75.0
HPP92_019756 Vanilla planifolia HOM05D003003 ORTHO05D008343 2.0e-13 80.1 59 67.8
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 2.6e-13 79.7 41 90.2
Zm00001eb290780 Zea mays HOM05D003003 ORTHO05D008343 2.6e-13 79.7 59 62.7
SGA_v2.0_scaffold2144G54083 Striga asiatica HOM05D003003 ORTHO05D008343 3.4e-13 79.3 61 62.3
SGA_v2.0_scaffold373G50193 Striga asiatica HOM05D003003 ORTHO05D008343 3.4e-13 79.3 61 62.3
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 4.5e-13 79.0 60 63.3
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 5.8e-13 78.6 64 60.9
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 5.8e-13 78.6 40 90.0
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 7.6e-13 78.2 64 60.9
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 1.0e-12 77.8 42 83.3
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 1.3e-12 77.4 65 58.5
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 2.2e-12 76.6 65 60.0
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 2.2e-12 76.6 58 60.3
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 2.2e-12 76.6 66 56.1
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 8.4e-12 74.7 64 60.9
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 2.1e-10 70.1 41 78.0
MELO3C025253.2 Cucumis melo HOM05D003003 ORTHO05D008343 1.3e-09 67.4 71 49.3
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 1.3e-09 67.4 40 75.0
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 4.3e-08 62.4 51 56.9
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 5.7e-08 62.0 67 44.8
SMO336G0035 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 5.7e-08 62.0 67 44.8
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 9.7e-08 61.2 45 66.7
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 9.7e-08 61.2 45 66.7
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 2.2e-07 60.1 44 63.6
Cpa.g.sc72.27 Carica papaya HOM05D003003 ORTHO05D008343 1.4e-06 57.4 42 61.9
Pp3c11_26820 Physcomitrium patens HOM05D003003 ORTHO05D008343 9.0e-06 54.7 62 46.8


User provided reference genes

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