Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g21030 Fragaria vesca HOM05D001186 ORTHO05D000971 7.0e-78 293.9 149 100.0
FAN14G0712 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.0e-78 293.9 149 100.0
FAN05G4110 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.8e-76 288.1 149 97.3
FAN02G0442 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.2e-75 285.0 149 98.0
FAN05G1048 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.2e-75 285.0 149 96.6
FAN09G1764 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.2e-69 266.5 143 95.1
CsaV3_3G038330 Cucumis sativus L. HOM05D001186 ORTHO05D000971 7.9e-13 77.8 98 46.9
Glyma.19G202300 Glycine max HOM05D001186 ORTHO05D000971 8.7e-12 74.3 85 51.8
QL06p036159 Quercus lobata HOM05D001186 ORTHO05D000971 1.1e-11 73.9 62 59.7
QL07p026339 Quercus lobata HOM05D001186 ORTHO05D000971 1.1e-11 73.9 62 59.7
ClCG10G017960 Citrullus lanatus HOM05D001186 ORTHO05D000971 2.5e-11 72.8 103 43.7
Ciclev10013749m.g Citrus clementina HOM05D001186 ORTHO05D000971 2.5e-11 72.8 91 51.6
Thecc.05G110300 Theobroma cacao HOM05D001186 ORTHO05D000971 3.3e-11 72.4 129 38.0
Haze_20128 Corylus avellana HOM05D001186 ORTHO05D000971 9.6e-11 70.9 86 46.5
CiPaw.09G024300 Carya illinoinensis HOM05D001186 ORTHO05D000971 1.6e-10 70.1 131 44.3
CiPaw.10G021400 Carya illinoinensis HOM05D001186 ORTHO05D000971 2.1e-10 69.7 89 51.7
Glyma.03G204900 Glycine max HOM05D001186 ORTHO05D000971 3.7e-10 68.9 64 56.2
Sed0014716 Sechium edule HOM05D001186 ORTHO05D000971 1.1e-09 67.4 68 57.4
Atru.chr8.1283 Acer truncatum HOM05D001186 ORTHO05D000971 1.4e-09 67.0 59 59.3
Medtr1g028910 Medicago truncatula HOM05D001186 ORTHO05D000971 1.4e-09 67.0 89 47.2
Duzib093G1352 Durio zibethinus HOM05D001186 ORTHO05D000971 2.4e-09 66.2 86 45.3
Manes.08G037400 Manihot esculenta HOM05D001186 ORTHO05D000971 2.4e-09 66.2 84 46.4
TPR.G33348 Trifolium pratense HOM05D000033 ORTHO05D001999 2.4e-09 66.2 65 55.4
Cfa020066 Carpinus fangiana HOM05D001186 ORTHO05D043666 4.0e-09 65.5 104 42.3
COL.COLO4_29493 Corchorus olitorius HOM05D001186 ORTHO05D000971 4.0e-09 65.5 109 38.5
PGSC0003DMG400000771 Solanum tuberosum HOM05D001186 ORTHO05D000971 4.0e-09 65.5 102 41.2
ClCG08G006550 Citrullus lanatus HOM05D001186 ORTHO05D000971 5.3e-09 65.1 66 53.0
TAR623G0067 Trochodendron aralioides HOM05D001186 ORTHO05D000971 5.3e-09 65.1 70 51.4
Duzib128G1674 Durio zibethinus HOM05D001186 ORTHO05D000971 6.9e-09 64.7 130 35.4
Potri.006G199300 Populus trichocarpa HOM05D001186 ORTHO05D000971 6.9e-09 64.7 63 60.3
Eucgr.A02544 Eucalyptus grandis HOM05D001186 ORTHO05D000971 9.0e-09 64.3 70 48.6
FvH4_2g14340 Fragaria vesca HOM05D001186 ORTHO05D000971 9.0e-09 64.3 80 47.5
FAN20G2326 Fragaria x ananassa HOM05D001186 ORTHO05D000971 9.0e-09 64.3 80 47.5
FAN24G3322 Fragaria x ananassa HOM05D001186 ORTHO05D000971 9.0e-09 64.3 80 47.5
CsaV3_6G030890 Cucumis sativus L. HOM05D001186 ORTHO05D000971 1.2e-08 63.9 64 54.7
Gohir.A01G199550 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.2e-08 63.9 132 37.1
HPP92_011922 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.2e-08 63.9 91 44.0
CSS0038492 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.5e-08 63.5 68 51.5
Oeu032976.1 Olea europaea HOM05D001186 ORTHO05D000971 1.5e-08 63.5 71 49.3
Sopen04g026910 Solanum pennellii HOM05D001186 ORTHO05D000971 1.5e-08 63.5 130 36.2
HPP92_000062 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.5e-08 63.5 84 44.0
Dinv25835 Davidia involucrata HOM05D001186 ORTHO05D000971 2.0e-08 63.2 116 38.8
Phvul.009G136500 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 2.0e-08 63.2 76 44.7
TWI60G0870 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 2.0e-08 63.2 96 40.6
FAN27G1120 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.6e-08 62.8 80 46.2
SalBow7G3795 Salvia bowleyana HOM05D001186 ORTHO05D000971 2.6e-08 62.8 65 53.8
HPP92_027454 Vanilla planifolia HOM05D001186 ORTHO05D000971 2.6e-08 62.8 114 36.8
CiPaw.15G019500 Carya illinoinensis HOM05D001186 ORTHO05D000971 3.4e-08 62.4 83 42.2
Glyma.10G273300 Glycine max HOM05D001186 ORTHO05D000971 3.4e-08 62.4 96 38.5
Gohir.D01G189650 Gossypium hirsutum HOM05D001186 ORTHO05D000971 3.4e-08 62.4 131 36.6
Gohir.D07G211466 Gossypium hirsutum HOM05D001186 ORTHO05D000971 3.4e-08 62.4 131 36.6
Gorai.002G233400 Gossypium raimondii HOM05D001186 ORTHO05D000971 3.4e-08 62.4 131 36.6
Peaxi162Scf00051g00055 Petunia axillaris HOM05D001186 ORTHO05D000971 3.4e-08 62.4 72 48.6
Thecc.08G146900 Theobroma cacao HOM05D001186 ORTHO05D000971 3.4e-08 62.4 95 41.1
TAR369G0643 Trochodendron aralioides HOM05D001186 ORTHO05D000971 3.4e-08 62.4 66 54.5
COL.COLO4_36019 Corchorus olitorius HOM05D001186 ORTHO05D000971 4.5e-08 62.0 75 46.7
MBI17_g11165_MAGBIO Magnolia biondii HOM05D001186 ORTHO05D000971 4.5e-08 62.0 76 48.7
RcHm_v2.0_Chr6g0276681 Rosa chinensis HOM05D001186 ORTHO05D000971 4.5e-08 62.0 80 45.0
Sed0010828 Sechium edule HOM05D001186 ORTHO05D000971 4.5e-08 62.0 97 46.4
VMungo1309G1275 Vigna mungo HOM05D001186 ORTHO05D000971 4.5e-08 62.0 76 43.4
DCAR_026737 Daucus carota HOM05D001186 ORTHO05D000971 5.8e-08 61.6 89 38.2
Duzib041G0538 Durio zibethinus HOM05D001186 ORTHO05D000971 5.8e-08 61.6 86 43.0
Glyma.06G124400 Glycine max HOM05D001186 ORTHO05D000971 5.8e-08 61.6 77 42.9
Oeu037616.1 Olea europaea HOM05D001186 ORTHO05D000971 5.8e-08 61.6 71 47.9
CANSAT64G0006 Cannabis sativa HOM05D001186 ORTHO05D000971 7.6e-08 61.2 62 53.2
Cfa020067 Carpinus fangiana HOM05D001186 ORTHO05D000971 7.6e-08 61.2 88 42.0
Eucgr.F02723 Eucalyptus grandis HOM05D001186 ORTHO05D000971 7.6e-08 61.2 76 46.1
FAN15G3153 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.6e-08 61.2 130 34.6
Glyma.04G239400 Glycine max HOM05D001186 ORTHO05D000971 7.6e-08 61.2 78 42.3
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 7.6e-08 61.2 74 44.6
Sabra06G0153200 Salix brachista HOM05D001186 ORTHO05D000971 7.6e-08 61.2 66 59.1
Actinidia15150 Actinidia chinensis HOM05D001186 ORTHO05D000971 9.9e-08 60.8 85 43.5
Glyma.13G039800 Glycine max HOM05D001186 ORTHO05D000971 9.9e-08 60.8 70 45.7
Manes.18G089366 Manihot esculenta HOM05D001186 ORTHO05D000971 9.9e-08 60.8 81 43.2
Phvul.008G159700 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 9.9e-08 60.8 95 41.1
Sabra05G0144600 Salix brachista HOM05D001186 ORTHO05D000971 9.9e-08 60.8 79 41.8
Sed0025511 Sechium edule HOM05D001186 ORTHO05D000971 9.9e-08 60.8 63 50.8
TAR376G0474 Trochodendron aralioides HOM05D001186 ORTHO05D000971 9.9e-08 60.8 91 44.0
HPP92_001096 Vanilla planifolia HOM05D001186 ORTHO05D000971 9.9e-08 60.8 68 45.6
HPP92_016162 Vanilla planifolia HOM05D001186 ORTHO05D000971 9.9e-08 60.8 73 49.3
HPP92_026215 Vanilla planifolia HOM05D001186 ORTHO05D000971 9.9e-08 60.8 73 49.3
GSVIVG01001661001 Vitis vinifera HOM05D001186 ORTHO05D000971 9.9e-08 60.8 99 40.4
CAN.G1664.1 Capsicum annuum HOM05D001186 ORTHO05D000971 1.3e-07 60.5 92 43.5
MELO3C009575.2 Cucumis melo HOM05D001186 ORTHO05D000971 1.3e-07 60.5 100 41.0
Hma1.2p1_0483F.1_g162740 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 1.3e-07 60.5 134 33.6
Lsat_1_v5_gn_1_8801 Lactuca sativa HOM05D001186 ORTHO05D000971 1.3e-07 60.5 90 40.0
Manes.02G176600 Manihot esculenta HOM05D001186 ORTHO05D000971 1.3e-07 60.5 72 45.8
Nn1g06171 Nelumbo nucifera HOM05D001186 ORTHO05D000971 1.3e-07 60.5 106 40.6
Nn5g28668 Nelumbo nucifera HOM05D001186 ORTHO05D000971 1.3e-07 60.5 111 35.1
Oeu051260.1 Olea europaea HOM05D001186 ORTHO05D000971 1.3e-07 60.5 124 35.5
Potri.002G070600 Populus trichocarpa HOM05D001186 ORTHO05D000971 1.3e-07 60.5 83 41.0
EL10Ac1g01490 Beta vulgaris HOM05D001186 ORTHO05D000971 1.7e-07 60.1 83 43.4
Thhalv10008673m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 1.7e-07 60.1 99 38.4
Gohir.A02G108503 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.7e-07 60.1 100 40.0
Gohir.D03G070700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.7e-07 60.1 100 40.0
Gorai.003G089500 Gossypium raimondii HOM05D001186 ORTHO05D000971 1.7e-07 60.1 100 40.0
Lalb_Chr11g0066501 Lupinus albus HOM05D001186 ORTHO05D000971 1.7e-07 60.1 66 45.5
Aqoxy6G00387 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 2.2e-07 59.7 90 36.7
Nitab4.5_0000427g0090 Nicotiana tabacum HOM05D001186 ORTHO05D000971 2.2e-07 59.7 76 44.7
Potri.005G189300 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.2e-07 59.7 98 38.8
Sabra02G0055300 Salix brachista HOM05D001186 ORTHO05D000971 2.2e-07 59.7 79 41.8
TAR381G0526 Trochodendron aralioides HOM05D001186 ORTHO05D000971 2.2e-07 59.7 88 42.0
HPP92_003212 Vanilla planifolia HOM05D001186 ORTHO05D000971 2.2e-07 59.7 70 51.4
Cpa.g.sc49.47 Carica papaya HOM05D001186 ORTHO05D000971 2.9e-07 59.3 100 39.0
Cfa018343 Carpinus fangiana HOM05D001186 ORTHO05D000971 2.9e-07 59.3 76 44.7
Haze_17728 Corylus avellana HOM05D001186 ORTHO05D000971 2.9e-07 59.3 76 44.7
Gorai.002G154000 Gossypium raimondii HOM05D001186 ORTHO05D000971 2.9e-07 59.3 98 41.8
Nn2g14422 Nelumbo nucifera HOM05D001186 ORTHO05D000971 2.9e-07 59.3 60 53.3
Nitab4.5_0000299g0270 Nicotiana tabacum HOM05D001186 ORTHO05D000971 2.9e-07 59.3 76 46.1
PGR042G2791 Punica granatum HOM05D001186 ORTHO05D000971 2.9e-07 59.3 72 45.8
unitig_899.g14702 Utricularia gibba HOM05D001186 ORTHO05D000971 2.9e-07 59.3 81 44.4
ATR0772G190 Amborella trichopoda HOM05D001186 ORTHO05D000971 3.8e-07 58.9 84 41.7
HPP92_000981 Vanilla planifolia HOM05D001186 ORTHO05D000971 3.8e-07 58.9 69 49.3
Duzib116G0881 Durio zibethinus HOM05D001186 ORTHO05D000971 4.9e-07 58.5 70 45.7
Glyma.14G124800 Glycine max HOM05D001186 ORTHO05D000971 4.9e-07 58.5 133 33.8
Potri.005G057800 Populus trichocarpa HOM05D001186 ORTHO05D000971 4.9e-07 58.5 57 49.1
Nitab4.5_0006679g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 6.4e-07 58.2 77 45.5
Prupe.8G022500 Prunus persica HOM05D001186 ORTHO05D000971 6.4e-07 58.2 81 44.4
TAR628G0442 Trochodendron aralioides HOM05D001186 ORTHO05D000971 6.4e-07 58.2 132 32.6
ClCG05G022640 Citrullus lanatus HOM05D001186 ORTHO05D000971 8.4e-07 57.8 57 50.9
MD05G1018300 Malus domestica HOM05D001186 ORTHO05D000971 8.4e-07 57.8 91 39.6
MD10G1018000 Malus domestica HOM05D001186 ORTHO05D000971 8.4e-07 57.8 86 40.7
Peaxi162Scf00263g00083 Petunia axillaris HOM05D001186 ORTHO05D000971 8.4e-07 57.8 78 44.9
Phvul.003G030601 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 8.4e-07 57.8 134 28.4
Zm00001eb259970 Zea mays HOM05D001186 ORTHO05D000971 8.4e-07 57.8 70 45.7
arahy.Tifrunner.gnm1.ann1.MZ5XB8 Arachis hypogaea HOM05D001186 ORTHO05D000971 1.1e-06 57.4 86 43.0
CiPaw.04G086200 Carya illinoinensis HOM05D001186 ORTHO05D000971 1.1e-06 57.4 95 37.9
Ca_16665_v3 Cicer arietinum L. HOM05D001186 ORTHO05D000971 1.1e-06 57.4 74 41.9
Lsat_1_v5_gn_6_34220 Lactuca sativa HOM05D001186 ORTHO05D000971 1.1e-06 57.4 75 44.0
QL02p024757 Quercus lobata HOM05D001186 ORTHO05D000971 1.1e-06 57.4 66 47.0
RcHm_v2.0_Chr2g0120181 Rosa chinensis HOM05D001186 ORTHO05D000971 1.1e-06 57.4 77 42.9
HanXRQChr04g0109411 Helianthus annuus HOM05D001186 ORTHO05D000971 1.4e-06 57.0 96 36.5
Nitab4.5_0000633g0120 Nicotiana tabacum HOM05D001186 ORTHO05D000971 1.4e-06 57.0 72 45.8
Oeu014479.1 Olea europaea HOM05D001186 ORTHO05D000971 1.4e-06 57.0 90 43.3
Sc20g0003400 Simmondsia chinensis HOM05D001186 ORTHO05D000971 1.4e-06 57.0 92 41.3
DCAR_014416 Daucus carota HOM05D001186 ORTHO05D000971 1.9e-06 56.6 102 36.3
DCAR_014417 Daucus carota HOM05D001186 ORTHO05D000971 1.9e-06 56.6 102 36.3
HanXRQChr02g0037451 Helianthus annuus HOM05D001186 ORTHO05D000971 1.9e-06 56.6 68 45.6
Os02g0539500 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 1.9e-06 56.6 77 44.2
Atru.chr13.2242 Acer truncatum HOM05D001186 ORTHO05D000971 2.4e-06 56.2 78 43.6
DCAR_014345 Daucus carota HOM05D001186 ORTHO05D000971 2.4e-06 56.2 88 43.2
Duzib093G1110 Durio zibethinus HOM05D001186 ORTHO05D000971 2.4e-06 56.2 127 33.9
Os08g0102900 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 2.4e-06 56.2 58 48.3
Phvul.009G148500 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 2.4e-06 56.2 76 43.4
Gohir.D01G123101 Gossypium hirsutum HOM05D001186 ORTHO05D000971 3.2e-06 55.8 98 39.8
Medtr1g028920 Medicago truncatula HOM05D001186 ORTHO05D000971 3.2e-06 55.8 85 45.9
EL10Ac6g14383 Beta vulgaris HOM05D001186 ORTHO05D000971 4.2e-06 55.5 100 36.0
CSS0012233 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 4.2e-06 55.5 158 29.7
CAN.G62.47 Capsicum annuum HOM05D001186 ORTHO05D000971 4.2e-06 55.5 81 42.0
CsaV3_5G034400 Cucumis sativus L. HOM05D001186 ORTHO05D000971 4.2e-06 55.5 58 46.6
Glyma.04G214700 Glycine max HOM05D001186 ORTHO05D000971 4.2e-06 55.5 78 41.0
Lalb_Chr06g0166031 Lupinus albus HOM05D001186 ORTHO05D000971 4.2e-06 55.5 127 30.7
Manes.12G152600 Manihot esculenta HOM05D001186 ORTHO05D000971 4.2e-06 55.5 108 36.1
PSO675G0766 Papaver somniferum HOM05D001186 ORTHO05D000971 4.2e-06 55.5 99 37.4
PGR044G0866 Punica granatum HOM05D001186 ORTHO05D000971 4.2e-06 55.5 80 46.2
Sabra05G0049800 Salix brachista HOM05D001186 ORTHO05D000971 4.2e-06 55.5 57 49.1
PGSC0003DMG400017564 Solanum tuberosum HOM05D001186 ORTHO05D000971 4.2e-06 55.5 82 40.2
SGA_v2.0_scaffold250G45000 Striga asiatica HOM05D001186 ORTHO05D000971 4.2e-06 55.5 82 39.0
TAR579G0002 Trochodendron aralioides HOM05D001186 ORTHO05D000971 4.2e-06 55.5 90 37.8
VMungo1309G2779 Vigna mungo HOM05D001186 ORTHO05D000971 4.2e-06 55.5 77 41.6
CSS0032299 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 5.5e-06 55.1 80 40.0
AUR62013512 Chenopodium quinoa HOM05D001186 ORTHO05D000971 5.5e-06 55.1 85 41.2
Migut.C01025 Erythranthe guttata HOM05D001186 ORTHO05D000971 5.5e-06 55.1 83 42.2
Glyma.06G151400 Glycine max HOM05D001186 ORTHO05D000971 5.5e-06 55.1 81 39.5
AL2G27310 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 7.1e-06 54.7 136 33.8
CiPaw.16G016300 Carya illinoinensis HOM05D001186 ORTHO05D000971 7.1e-06 54.7 98 38.8
COL.COLO4_07638 Corchorus olitorius HOM05D001186 ORTHO05D000971 7.1e-06 54.7 94 38.3
Dinv24322 Davidia involucrata HOM05D001186 ORTHO05D000971 7.1e-06 54.7 87 40.2
Hma1.2p1_0006F.1_g004610 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 7.1e-06 54.7 122 32.8
Lsat_1_v5_gn_9_40280 Lactuca sativa HOM05D001186 ORTHO05D000971 7.1e-06 54.7 88 38.6
Lalb_Chr23g0271401 Lupinus albus HOM05D001186 ORTHO05D000971 7.1e-06 54.7 75 40.0
Medtr3g090350 Medicago truncatula HOM05D001186 ORTHO05D000971 7.1e-06 54.7 74 41.9
Nitab4.5_0002121g0030 Nicotiana tabacum HOM05D001186 ORTHO05D000971 7.1e-06 54.7 104 35.6
Sp6g05490 Schrenkiella parvula HOM05D000005 ORTHO05D012037 7.1e-06 54.7 86 40.7
Lj4P850T14 Lonicera japonica HOM05D001186 ORTHO05D000971 9.3e-06 54.3 71 46.5
Oeu046011.1 Olea europaea HOM05D001186 ORTHO05D000971 9.3e-06 54.3 113 37.2
Solyc11g005720.1 Solanum lycopersicum HOM05D001186 ORTHO05D000971 9.3e-06 54.3 101 34.7
Sopen11g001680 Solanum pennellii HOM05D001186 ORTHO05D000971 9.3e-06 54.3 101 34.7
PGSC0003DMG400028672 Solanum tuberosum HOM05D001186 ORTHO05D000971 9.3e-06 54.3 101 34.7


User provided reference genes

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