Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.5e-92 342.8 173 100.0
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 1.8e-85 319.3 166 97.6
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.8e-85 319.3 171 94.2
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.0e-84 315.8 171 93.6
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.7e-83 312.8 173 91.9
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 1.1e-50 203.8 178 67.4
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 3.6e-17 92.4 132 43.9
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 2.8e-14 82.8 151 42.4
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 8.3e-14 81.3 86 55.8
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 3.1e-13 79.3 124 41.1
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 4.1e-13 79.0 137 43.8
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 9.1e-13 77.8 136 40.4
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.7e-11 73.6 111 39.6
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 2.2e-11 73.2 123 40.7
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 2.9e-11 72.8 127 40.9
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 3.8e-11 72.4 134 41.8
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 3.8e-11 72.4 122 43.4
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 3.8e-11 72.4 122 43.4
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 6.5e-11 71.6 134 41.8
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 6.5e-11 71.6 105 44.8
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 1.1e-10 70.9 140 38.6
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.9e-10 70.1 134 38.1
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 2.5e-10 69.7 126 40.5
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 3.2e-10 69.3 120 42.5
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 3.2e-10 69.3 129 38.8
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 4.2e-10 68.9 68 58.8
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 5.5e-10 68.6 98 44.9
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 7.2e-10 68.2 122 41.8
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 9.4e-10 67.8 127 38.6
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 9.4e-10 67.8 138 40.6
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 1.2e-09 67.4 127 39.4
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 1.2e-09 67.4 178 33.1
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.2e-09 67.4 126 39.7
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.2e-09 67.4 86 51.2
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.1e-09 66.6 86 51.2
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 2.7e-09 66.2 83 48.2
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.6e-09 65.9 69 50.7
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 3.6e-09 65.9 82 51.2
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 4.7e-09 65.5 85 44.7
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 6.1e-09 65.1 108 41.7
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 8.0e-09 64.7 105 41.9
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 8.0e-09 64.7 126 37.3
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 1.0e-08 64.3 89 46.1
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 1.0e-08 64.3 83 45.8
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 1.0e-08 64.3 125 38.4
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 1.8e-08 63.5 130 40.8
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 2.3e-08 63.2 123 38.2
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 2.3e-08 63.2 122 39.3
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 3.0e-08 62.8 113 38.1
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 3.0e-08 62.8 73 50.7
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 3.0e-08 62.8 127 37.0
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 5.2e-08 62.0 76 47.4
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 6.8e-08 61.6 138 31.9
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 8.8e-08 61.2 101 43.6
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 8.8e-08 61.2 68 51.5
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 8.8e-08 61.2 68 52.9
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 8.8e-08 61.2 97 45.4
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.2e-07 60.8 80 48.8
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 1.2e-07 60.8 80 48.8
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 1.2e-07 60.8 68 51.5
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.2e-07 60.8 121 38.0
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 1.2e-07 60.8 125 38.4
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 2.0e-07 60.1 101 42.6
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 2.0e-07 60.1 126 37.3
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.0e-07 60.1 110 42.7
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 2.6e-07 59.7 37 64.9
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 3.4e-07 59.3 80 47.5
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 3.4e-07 59.3 87 42.5
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 4.4e-07 58.9 80 47.5
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 4.4e-07 58.9 104 41.3
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 5.7e-07 58.5 144 34.7
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 7.5e-07 58.2 67 49.3
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 7.5e-07 58.2 67 49.3
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 7.5e-07 58.2 80 46.2
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 7.5e-07 58.2 138 31.2
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.3e-06 57.4 54 50.0
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 1.3e-06 57.4 69 49.3
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 1.7e-06 57.0 84 39.3
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 2.8e-06 56.2 126 38.1
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 2.8e-06 56.2 59 50.8
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.7e-06 55.8 70 41.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 4.9e-06 55.5 137 36.5
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 6.3e-06 55.1 153 30.7
Zm00001eb141720 Zea mays HOM05D024678 ORTHO05D025976 6.3e-06 55.1 70 45.7
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 8.3e-06 54.7 123 36.6
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 8.3e-06 54.7 78 48.7


User provided reference genes

Program Settings