Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.5e-202 706.8 367 100.0
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-193 679.9 367 97.0
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.5e-187 657.9 379 92.1
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 5.4e-156 554.7 389 77.4
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 6.0e-139 498.0 336 78.6
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 2.9e-133 479.2 390 66.7
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.3e-130 470.3 245 98.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 3.1e-119 432.6 375 64.5
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.3e-104 384.0 367 58.0
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 4.8e-104 382.1 352 60.5
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 5.3e-103 378.6 364 58.5
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 6.1e-99 365.2 359 55.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 5.1e-98 362.1 353 56.9
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 4.8e-96 355.5 353 55.0
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 4.1e-95 352.4 357 58.8
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 6.9e-95 351.7 349 55.3
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.0e-94 350.1 345 56.8
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 5.0e-93 345.5 366 55.2
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 8.5e-93 344.7 345 57.1
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.9e-92 343.6 345 56.8
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 6.1e-91 338.6 364 52.7
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 7.9e-91 338.2 344 54.1
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 3.9e-90 335.9 345 53.9
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 1.5e-89 334.0 369 52.3
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.3e-89 332.8 352 54.3
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 3.7e-88 329.3 343 52.8
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 3.7e-88 329.3 336 54.5
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.1e-87 327.8 343 55.7
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.1e-87 327.8 342 53.8
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.4e-87 327.4 349 53.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.4e-87 327.4 343 55.4
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.4e-87 326.6 352 55.7
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.4e-87 326.6 347 55.0
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.3e-87 325.5 343 55.7
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 9.1e-87 324.7 348 52.0
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.6e-86 323.9 353 53.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-86 323.9 348 53.2
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 2.2e-85 320.1 352 51.4
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 8.5e-85 318.2 354 52.5
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.9e-84 317.0 356 52.8
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.6e-83 313.9 348 52.0
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 6.1e-83 312.0 348 51.4
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.4e-82 310.8 355 48.5
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.7e-82 308.5 352 48.6
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 8.8e-82 308.1 345 49.3
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.5e-81 307.4 345 49.0
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.3e-81 306.2 328 52.1
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.7e-80 303.9 348 50.9
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 2.8e-80 303.1 343 51.6
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 4.8e-80 302.4 338 50.9
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 1.8e-79 300.4 395 46.8
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.6e-78 297.4 351 47.6
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 3.8e-77 292.7 344 52.3
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 3.2e-76 289.7 348 50.0
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 3.2e-76 289.7 367 46.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 5.5e-76 288.9 366 47.3
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.8e-74 283.9 345 47.8
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 2.3e-74 283.5 327 50.5
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 4.0e-74 282.7 327 49.8
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 4.0e-74 282.7 348 50.9
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.7e-72 277.3 353 45.9
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.7e-72 277.3 344 48.5
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 2.2e-72 276.9 325 49.2
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 3.7e-72 276.2 320 49.4
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.4e-71 274.2 322 49.4
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.8e-71 273.9 328 48.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 5.4e-71 272.3 326 48.5
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 9.1e-71 271.6 328 49.4
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 2.0e-70 270.4 325 48.3
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 2.0e-70 270.4 383 44.6
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 2.7e-70 270.0 387 45.0
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 4.5e-70 269.2 339 46.9
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.0e-69 268.1 333 47.1
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 2.3e-69 266.9 346 45.4
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 2.9e-69 266.5 330 47.6
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.8e-69 266.2 330 47.3
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 5.0e-69 265.8 325 48.0
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 8.6e-69 265.0 328 47.9
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.5e-68 263.5 345 43.5
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.2e-67 261.2 348 47.4
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.6e-67 260.8 327 46.8
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.6e-67 260.8 309 46.9
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 2.8e-67 260.0 357 45.7
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.8e-66 257.3 333 46.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 2.3e-66 256.9 328 47.0
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 9.8e-65 251.5 312 43.6
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 3.7e-64 249.6 368 43.5
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 4.1e-63 246.1 330 46.1
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 3.8e-61 239.6 357 42.6
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 6.6e-61 238.8 459 37.0
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.5e-60 237.7 392 40.6
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 3.3e-60 236.5 302 43.0
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 6.1e-59 232.3 343 41.4
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 6.1e-59 232.3 346 42.5
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 5.2e-58 229.2 286 44.4
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.7e-56 224.2 336 39.9
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.1e-55 221.5 345 42.3
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.6e-54 217.6 368 38.3
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.3e-53 213.8 207 57.0
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-53 213.8 295 41.7
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.1e-52 211.5 266 47.0
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 8.0e-51 205.3 262 45.8
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.4e-50 204.5 306 40.8
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.4e-50 204.5 343 35.3
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 6.4e-48 195.7 328 40.2
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 3.2e-47 193.4 185 56.8
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.0e-45 188.3 369 33.6
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.3e-45 187.2 354 36.7
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.3e-45 187.2 198 49.5
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 8.6e-45 185.3 209 50.7
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.9e-44 184.1 302 40.7
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 4.7e-43 179.5 341 36.4
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 2.3e-42 177.2 316 36.4
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 3.7e-40 169.9 262 43.1
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 3.7e-40 169.9 262 43.1
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 3.7e-40 169.9 262 43.1
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.6e-38 164.5 246 39.8
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 6.6e-37 159.1 217 45.6
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 9.5e-36 155.2 250 42.0
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 2.4e-34 150.6 216 42.1
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 9.9e-33 145.2 293 34.5
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.9e-32 143.7 120 58.3
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.3e-29 134.0 198 42.4
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 8.7e-29 132.1 174 43.7
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.6e-22 111.3 154 46.1
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 3.0e-21 107.1 385 27.5
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.9e-20 104.4 94 64.9
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 4.8e-19 99.8 112 40.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 6.2e-19 99.4 91 56.0
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 8.1e-19 99.0 403 25.1
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 4.0e-18 96.7 111 44.1
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 3.8e-16 90.1 260 28.5
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.1e-13 79.7 65 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.5e-12 78.2 183 25.7
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.9e-12 77.8 65 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 9.9e-09 65.5 387 23.5
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 4.2e-07 60.1 139 34.5
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.2e-07 60.1 64 56.2
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 7.1e-07 59.3 99 35.4
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 6.0e-06 56.2 44 65.9


User provided reference genes

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