Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 2370.5 1244 100.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 2309.6 1246 97.5
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 2222.2 1242 93.6
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 2140.9 1253 89.5
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 2098.2 1172 95.0
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1874.0 1172 87.3
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1740.3 1257 74.1
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1525.0 1263 64.1
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1520.0 1261 64.8
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1511.1 1265 63.3
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1460.7 1266 61.7
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1396.3 1260 60.1
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1389.8 1257 59.7
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1371.3 1257 58.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1370.9 1257 59.6
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1369.4 1252 59.5
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1360.9 1263 58.5
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1343.6 1247 58.4
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1343.6 1252 57.8
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1342.0 1252 58.0
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1341.3 1247 57.7
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1337.4 1258 58.4
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1335.1 929 77.2
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1334.7 1256 59.8
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1333.9 1251 57.5
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1333.2 1251 57.5
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1325.1 1273 56.9
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1324.3 1252 57.1
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1322.4 1249 57.2
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1320.1 1259 55.6
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1320.1 1265 56.8
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1319.7 1265 56.7
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1315.8 1255 58.2
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1314.3 1259 56.2
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1313.1 1265 56.1
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1304.7 1274 55.8
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1300.4 1256 55.9
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1289.2 1252 56.7
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1285.4 1233 55.6
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1283.9 1252 56.1
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1266.1 1260 54.5
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1266.1 1255 54.9
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1263.4 1263 55.2
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1241.1 1246 53.2
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1226.8 1252 53.8
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1224.9 1097 60.1
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1211.1 1261 53.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1208.0 1246 54.9
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1207.2 1246 52.5
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1199.9 1259 51.8
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1195.6 1243 54.5
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1193.3 1247 51.9
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1188.7 1282 52.3
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1188.3 1117 58.2
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1186.8 1270 54.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1184.9 1287 51.9
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1182.5 1265 51.7
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1182.5 1264 51.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1179.5 1262 53.7
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1177.9 1251 52.1
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1177.5 1008 61.8
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1177.5 1264 51.6
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1173.3 1247 51.8
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1162.5 1244 51.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1160.6 1254 52.3
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1159.1 1253 52.0
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1157.5 1258 50.5
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1155.2 1247 51.4
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1264 52.6
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1151.0 1258 51.6
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1150.2 1244 50.2
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1146.3 1234 54.0
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1139.8 1267 50.6
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1137.1 1251 52.4
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1134.8 1248 52.7
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1129.4 1242 51.9
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1221 52.4
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1114.4 1255 50.9
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1113.6 1236 50.4
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1112.1 1256 50.8
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1256 50.6
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1092.8 1267 50.3
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1088.6 1251 49.3
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1088.6 1292 49.6
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1081.6 956 61.9
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 5.4e-309 1064.7 1258 49.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.8e-307 1059.7 1262 49.4
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 1.7e-294 1016.5 861 62.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 2.3e-291 1006.1 1042 51.2
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.1e-288 997.3 1245 46.3
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.5e-287 993.4 1212 46.6
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 3.4e-258 896.0 980 51.3
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 5.2e-243 845.5 848 55.9
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 2.3e-230 803.5 1000 48.0
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.2e-226 791.2 971 48.9
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 4.3e-221 772.7 1288 39.1
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 8.4e-217 758.4 1242 38.5
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 2.7e-215 753.4 1242 39.9
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.3e-204 718.0 903 45.5
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 3.9e-174 616.7 797 44.7
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.9e-169 600.5 1119 36.0
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 6.1e-167 592.8 759 43.3
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.1e-163 580.5 882 39.2
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 9.4e-160 568.9 569 54.3
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 4.1e-155 553.5 783 41.6
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 6.8e-142 509.6 427 68.1
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.8e-139 501.5 640 44.4
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.4e-125 453.8 456 52.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.3e-112 410.6 598 41.0
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 4.0e-102 377.5 360 58.6
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 8.4e-100 369.8 376 60.1
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 4.3e-96 357.5 351 59.3
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 4.7e-95 354.0 344 60.5
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 4.0e-94 350.9 236 73.7
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.5e-93 349.0 340 60.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.8e-92 344.4 662 34.0
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 4.0e-86 324.3 382 45.8
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.3e-81 309.3 496 35.9
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 1.3e-71 276.2 397 41.3
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.9e-64 252.3 454 34.1
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-61 241.5 340 37.4
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.6e-50 204.5 297 40.7
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.9e-44 185.3 323 35.0
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.6e-40 172.2 167 54.5
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 6.3e-31 141.0 313 35.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 3.4e-24 118.6 136 45.6
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 3.7e-23 115.2 120 47.5
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 7.0e-22 110.9 120 47.5
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 2.0e-21 109.4 120 46.7
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.7e-20 106.3 203 36.9
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.1e-18 97.8 119 42.9
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.4e-17 96.7 431 25.5
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.9e-11 76.3 61 60.7
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.0e-08 66.2 298 24.2


User provided reference genes

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