Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.1e-284 979.9 499 100.0
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.3e-281 971.1 499 99.2
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.0e-279 964.1 499 98.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.7e-274 946.4 499 97.2
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 3.5e-251 871.3 504 89.3
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.7e-249 864.0 498 90.4
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 9.5e-204 713.8 509 75.4
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 4.0e-202 708.4 511 74.4
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.5e-201 706.4 504 75.4
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 3.2e-199 698.7 515 72.6
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.1e-196 690.3 514 73.2
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.9e-196 689.5 517 73.7
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.5e-196 689.1 511 73.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 3.3e-196 688.7 511 71.8
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 9.5e-196 687.2 510 70.4
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.2e-195 686.8 516 71.3
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.6e-195 686.4 510 70.8
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.0e-194 683.7 511 72.8
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.9e-194 680.6 516 70.7
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.9e-194 680.6 518 71.0
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 4.4e-193 678.3 511 71.2
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.4e-191 672.5 519 71.1
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.1e-191 671.8 520 69.4
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.0e-190 669.5 508 69.3
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 6.0e-190 667.9 515 70.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.2e-187 660.2 519 68.6
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.6e-187 659.8 515 68.0
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.6e-187 659.8 514 70.4
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 9.8e-185 650.6 511 67.5
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.6e-182 643.3 512 69.7
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 2.1e-182 642.9 507 67.7
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.5e-182 642.1 510 69.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 6.0e-182 641.3 505 70.3
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 7.8e-182 641.0 514 69.3
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 7.8e-182 641.0 510 68.2
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 3.0e-181 639.0 513 69.6
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 6.6e-181 637.9 506 68.0
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 1.1e-180 637.1 515 66.6
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.9e-180 636.3 510 68.6
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 2.5e-180 636.0 509 67.4
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 7.3e-180 634.4 522 68.0
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 7.3e-180 634.4 510 67.8
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.8e-179 632.5 511 67.9
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 2.8e-179 632.5 512 68.9
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.8e-178 629.8 510 68.0
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 1.8e-178 629.8 518 67.2
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 8.9e-178 627.5 526 65.8
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.2e-177 627.1 507 66.7
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 3.4e-177 625.5 512 66.4
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.4e-177 625.5 514 66.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 7.6e-177 624.4 518 66.8
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 9.9e-177 624.0 523 66.0
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.2e-176 622.9 512 66.2
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.1e-175 620.5 516 65.9
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.1e-175 620.5 509 66.0
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.4e-175 620.2 516 66.5
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 4.1e-175 618.6 518 66.2
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 4.1e-175 618.6 515 66.6
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 4.1e-175 618.6 506 66.6
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.4e-175 618.2 511 66.3
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.6e-174 616.7 512 66.0
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-174 616.7 509 66.6
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 6.0e-174 614.8 517 66.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 5.1e-173 611.7 504 66.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 5.1e-173 611.7 509 67.0
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.5e-172 610.1 533 64.2
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.9e-172 609.8 516 65.3
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 3.3e-172 609.0 503 66.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 5.6e-172 608.2 517 66.2
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.6e-171 606.7 521 66.4
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.8e-171 605.9 512 66.2
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 4.7e-171 605.1 502 65.7
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 4.7e-171 605.1 511 65.0
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 6.2e-171 604.7 519 65.9
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 6.2e-171 604.7 516 64.9
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 8.1e-171 604.4 522 64.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.8e-170 603.2 516 64.7
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 5.2e-170 601.7 514 65.0
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.2e-169 600.5 515 66.2
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.5e-169 600.1 504 66.7
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 2.0e-169 599.7 504 66.3
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 3.4e-169 599.0 517 63.6
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 4.4e-169 598.6 515 66.0
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 5.8e-169 598.2 506 66.2
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 7.6e-169 597.8 502 66.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.7e-168 596.7 502 66.5
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 3.8e-168 595.5 508 64.2
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.3e-167 590.9 467 69.0
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 8.7e-165 584.3 521 63.1
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.1e-164 583.9 518 63.5
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.3e-164 582.4 520 64.0
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 9.6e-164 580.9 515 63.7
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 3.6e-163 578.9 524 63.7
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 4.4e-161 572.0 511 63.0
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.9e-159 566.6 513 62.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.5e-156 557.0 466 65.2
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.3e-156 555.8 505 62.4
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 3.6e-155 552.4 523 59.3
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 9.9e-153 544.3 533 59.7
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.4e-151 538.5 520 59.6
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.6e-150 535.4 533 58.9
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.8e-146 523.5 517 57.6
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 2.5e-143 513.1 454 63.2
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 4.3e-140 502.3 518 56.9
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.2e-134 484.2 523 56.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.6e-134 483.8 518 56.9
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 2.7e-134 483.0 523 56.4
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 4.6e-134 482.3 510 57.8
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 6.3e-131 471.9 478 58.2
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 2.2e-128 463.4 538 53.2
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.4e-117 427.6 506 52.6
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.4e-114 417.5 491 53.4
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.0e-113 413.7 306 70.6
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.0e-109 401.4 517 48.7
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 5.3e-106 389.0 526 47.1
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.2e-100 371.3 507 46.5
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 4.1e-98 362.8 292 65.8
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 4.5e-89 332.8 502 45.0
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.1e-79 301.6 581 38.9
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 7.6e-60 235.7 283 49.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.6e-52 210.7 199 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.7e-48 198.0 334 39.2
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 5.8e-36 156.4 273 39.9
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.1e-33 147.9 84 85.7
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 2.7e-25 120.9 102 65.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 2.0e-20 104.8 525 26.9
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.7e-19 101.7 527 26.0
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 4.2e-18 97.1 80 65.0
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.7e-17 94.4 54 79.6
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 6.9e-13 79.7 77 49.4
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.2e-12 79.0 205 31.7
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.5e-10 70.1 64 57.8
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.9e-09 66.2 68 58.8


User provided reference genes

Program Settings