Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 4.3e-75 284.6 152 100.0
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 3.1e-73 278.5 153 98.7
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.1e-73 278.5 152 98.0
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.9e-70 269.2 152 96.7
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.7e-69 265.4 152 94.7
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.0e-63 246.9 157 87.3
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 1.8e-41 172.9 149 69.1
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 2.0e-40 169.5 144 70.8
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 5.5e-38 161.4 143 68.5
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 2.7e-32 142.5 140 62.9
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 7.2e-30 134.4 146 56.8
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 1.8e-28 129.8 145 55.9
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 1.8e-28 129.8 149 57.0
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 8.8e-28 127.5 146 56.8
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 1.5e-27 126.7 138 55.1
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 3.4e-27 125.6 140 55.7
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 3.4e-27 125.6 143 56.6
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 7.5e-27 124.4 147 49.0
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 7.5e-27 124.4 143 56.6
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 7.5e-27 124.4 148 53.4
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 9.8e-27 124.0 148 54.1
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 9.8e-27 124.0 141 57.4
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 9.8e-27 124.0 142 54.9
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 9.8e-27 124.0 143 57.3
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.7e-26 123.2 138 55.1
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 2.8e-26 122.5 142 53.5
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 3.7e-26 122.1 147 55.8
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 4.8e-26 121.7 142 56.3
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 1.4e-25 120.2 143 51.7
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 2.4e-25 119.4 149 52.3
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 4.1e-25 118.6 147 53.7
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 4.1e-25 118.6 147 53.7
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 9.1e-25 117.5 147 53.7
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 1.2e-24 117.1 142 54.2
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 2.7e-24 115.9 148 53.4
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 3.5e-24 115.5 142 52.8
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 3.5e-24 115.5 146 50.0
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 4.5e-24 115.2 158 50.6
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 1.0e-23 114.0 141 55.3
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 1.3e-23 113.6 142 52.8
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 2.2e-23 112.8 158 50.0
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 3.8e-23 112.1 137 55.5
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 5.0e-23 111.7 140 50.7
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.9e-22 109.8 142 50.7
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 2.5e-22 109.4 152 50.7
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 5.5e-22 108.2 138 52.9
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 7.2e-22 107.8 150 50.0
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 1.2e-21 107.1 149 48.3
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 2.1e-21 106.3 142 48.6
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 2.1e-21 106.3 136 51.5
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 2.8e-21 105.9 132 49.2
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 2.8e-21 105.9 132 49.2
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 3.6e-21 105.5 144 46.5
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 3.6e-21 105.5 144 46.5
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 3.6e-21 105.5 144 46.5
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 4.7e-21 105.1 144 46.5
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 6.1e-21 104.8 145 49.7
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 8.0e-21 104.4 145 48.3
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 1.0e-20 104.0 140 47.1
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 1.8e-20 103.2 137 50.4
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 1.8e-20 103.2 147 48.3
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 1.8e-20 103.2 147 43.5
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 1.8e-20 103.2 147 43.5
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 2.3e-20 102.8 144 46.5
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 2.3e-20 102.8 149 48.3
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 4.0e-20 102.1 144 45.8
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 4.0e-20 102.1 157 46.5
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 4.0e-20 102.1 158 45.6
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 4.0e-20 102.1 132 48.5
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 4.0e-20 102.1 145 47.6
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 5.2e-20 101.7 145 46.2
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 8.8e-20 100.9 144 46.5
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 1.5e-19 100.1 144 45.1
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 2.6e-19 99.4 145 47.6
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 3.4e-19 99.0 144 50.0
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 3.4e-19 99.0 135 46.7
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 3.4e-19 99.0 135 46.7
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 7.5e-19 97.8 148 45.9
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 7.5e-19 97.8 147 46.3
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.3e-18 97.1 143 45.5
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 2.8e-18 95.9 132 48.5
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 6.3e-18 94.7 147 45.6
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 1.1e-17 94.0 135 49.6
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 1.4e-17 93.6 154 43.5
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 3.1e-17 92.4 144 43.8
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 4.1e-17 92.0 141 46.1
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 5.4e-17 91.7 150 44.0
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 9.2e-17 90.9 141 44.0
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 1.6e-16 90.1 109 55.0
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 2.0e-16 89.7 141 43.3
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 2.0e-16 89.7 137 45.3
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 6.6e-15 84.7 145 40.7
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 1.9e-14 83.2 132 45.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 3.3e-14 82.4 137 40.9
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 4.3e-14 82.0 132 43.2
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 1.2e-13 80.5 142 41.5
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 8.9e-12 74.3 156 41.0
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 2.6e-11 72.8 145 40.7
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 5.7e-11 71.6 127 48.8
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 1.7e-10 70.1 100 44.0
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 2.9e-10 69.3 173 34.7
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 1.2e-08 63.9 175 33.1
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 4.6e-08 62.0 98 42.9
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 1.0e-07 60.8 135 37.8
Os03g0128300 Oryza sativa ssp. japonica HOM05D007306 ORTHO05D009112 6.6e-07 58.2 153 33.3
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 8.6e-07 57.8 31 77.4
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 4.3e-06 55.5 91 37.4


User provided reference genes

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