Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.1e-241 838.2 465 100.0
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-228 796.2 465 96.3
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-216 756.5 465 93.8
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.7e-210 736.1 465 87.1
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 9.2e-185 650.6 465 80.6
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.3e-122 444.1 464 59.5
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 7.2e-121 438.3 464 53.2
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-119 433.7 464 53.0
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 6.7e-111 405.2 464 52.4
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 3.3e-110 402.9 463 49.9
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.2e-109 400.2 463 51.6
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.8e-109 399.8 463 49.7
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 8.2e-109 398.3 464 49.4
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 4.1e-108 396.0 379 57.0
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 9.1e-108 394.8 410 53.4
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 4.5e-107 392.5 466 48.1
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.7e-106 390.6 464 48.5
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 6.5e-106 388.7 464 53.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 9.4e-105 384.8 459 53.2
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.6e-104 384.0 463 47.3
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.1e-104 383.6 465 52.5
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.1e-102 377.9 465 46.9
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.0e-102 377.1 403 54.1
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.0e-102 377.1 452 49.1
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.8e-101 372.5 464 48.5
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 8.2e-101 371.7 464 49.6
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 5.3e-100 369.0 465 48.4
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.1e-100 368.2 465 48.0
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.2e-99 367.9 547 44.8
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 3.5e-99 366.3 410 51.2
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 7.7e-99 365.2 465 46.5
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.2e-98 363.6 464 44.4
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 6.5e-98 362.1 464 47.6
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.5e-97 360.9 461 48.4
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.5e-97 360.1 615 39.2
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.7e-96 356.7 400 51.0
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 6.7e-95 352.1 464 44.2
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.6e-94 350.1 464 43.5
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.3e-93 347.8 501 43.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 4.8e-93 345.9 452 44.9
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 4.8e-93 345.9 455 44.6
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 2.4e-92 343.6 464 42.2
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 4.1e-92 342.8 463 42.8
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.0e-91 340.5 451 43.7
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 5.9e-91 339.0 464 42.7
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 5.9e-91 339.0 464 43.1
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 7.7e-91 338.6 463 41.9
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.0e-90 338.2 462 46.8
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.3e-90 337.8 451 43.7
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 2.9e-90 336.7 465 47.7
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 3.8e-90 336.3 464 47.2
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 5.0e-90 335.9 464 45.7
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 1.1e-89 334.7 463 41.5
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 2.5e-89 333.6 597 39.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 7.2e-89 332.0 492 40.4
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 9.4e-89 331.6 464 42.2
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 2.1e-88 330.5 462 42.0
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 2.7e-88 330.1 462 41.8
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.4e-87 327.8 463 42.5
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.4e-87 327.8 464 44.6
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.8e-87 327.4 467 42.4
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.0e-87 326.2 466 47.6
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 5.2e-87 325.9 471 42.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.6e-86 323.6 396 47.7
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.6e-86 323.6 463 42.1
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 5.7e-86 322.4 473 41.2
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 7.5e-86 322.0 480 41.2
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 7.5e-86 322.0 480 41.2
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 9.8e-86 321.6 464 43.8
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.3e-85 321.2 463 43.0
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 4.8e-85 319.3 480 41.2
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 6.3e-85 318.9 464 40.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 9.1e-84 315.1 463 42.5
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 3.5e-83 313.2 463 40.4
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.9e-83 312.4 367 50.4
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.3e-82 311.2 463 41.9
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-82 311.2 466 40.8
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.9e-82 310.1 463 40.8
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 8.5e-82 308.5 517 37.9
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.0e-79 300.1 464 42.2
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 4.0e-79 299.7 463 40.4
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 5.2e-79 299.3 463 42.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 5.7e-78 295.8 464 40.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 7.5e-78 295.4 463 43.2
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 3.7e-77 293.1 330 51.2
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.8e-76 290.8 465 39.4
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 3.1e-76 290.0 484 37.4
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 5.4e-76 289.3 466 39.3
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.2e-75 288.1 466 37.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.0e-75 287.3 468 40.4
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 3.5e-75 286.6 462 40.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 5.9e-75 285.8 457 39.6
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 7.7e-75 285.4 467 43.7
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.3e-74 284.6 412 44.2
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.8e-74 283.1 464 40.1
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.9e-73 280.8 462 42.6
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.3e-73 279.6 464 41.6
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 1.2e-72 278.1 464 40.3
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 4.4e-70 269.6 317 50.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 5.4e-68 262.7 400 39.0
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.0e-68 262.3 412 41.3
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 7.0e-68 262.3 326 46.3
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.6e-67 261.2 450 42.0
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 5.9e-67 259.2 410 39.8
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.7e-66 257.7 479 36.7
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 7.3e-65 252.3 450 37.1
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 3.6e-64 250.0 252 49.6
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 4.0e-63 246.5 383 40.7
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.6e-59 234.6 465 34.6
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.0e-58 231.9 472 35.6
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 5.2e-55 219.5 314 41.1
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.0e-54 217.6 450 35.8
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 8.3e-53 212.2 372 38.4
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 4.1e-52 209.9 464 35.8
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 3.5e-51 206.8 491 32.0
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-50 204.1 451 34.8
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 4.7e-48 196.4 327 40.1
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.3e-47 194.1 205 48.3
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.9e-45 187.2 469 29.6
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-44 185.3 255 40.4
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.9e-44 184.5 225 44.4
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.9e-41 174.5 469 28.4
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 9.6e-41 172.2 257 38.9
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.8e-40 170.6 435 32.0
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 3.4e-38 163.7 243 44.9
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-37 161.8 220 47.3
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 3.2e-36 157.1 206 39.8
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 6.2e-32 142.9 366 31.1
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 3.2e-28 130.6 174 46.6
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 1.3e-26 125.2 417 28.1
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.8e-26 124.8 163 40.5
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 6.7e-26 122.9 97 59.8
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 8.7e-26 122.5 204 34.3
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.9e-25 121.3 412 26.2
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 1.2e-22 112.1 248 30.6
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.6e-19 101.7 165 39.4
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.5e-19 100.5 100 49.0
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.0e-19 99.8 122 44.3
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.3e-18 97.8 99 47.5
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 8.7e-18 95.9 149 39.6
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-17 95.1 169 37.3
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.6e-16 91.7 384 25.0
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 9.0e-15 85.9 98 51.0
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 5.8e-14 83.2 137 41.6
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 4.9e-13 80.1 74 58.1
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 4.2e-12 77.0 74 54.1
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 3.9e-10 70.5 211 29.4
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 5.3e-07 60.1 98 39.8


User provided reference genes

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