Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-169 599.4 315 100.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.9e-163 578.2 315 97.5
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-159 566.2 313 96.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.8e-153 545.4 314 90.4
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 3.4e-151 538.5 312 90.1
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.2e-149 530.8 331 88.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.1e-144 515.4 300 91.7
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 4.1e-136 488.4 315 79.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.7e-129 466.5 319 77.4
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 7.0e-128 461.1 318 76.1
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.0e-123 445.7 307 73.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.0e-123 445.3 306 73.2
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 8.8e-123 444.1 251 85.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.0e-122 443.0 295 75.3
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.4e-122 442.2 301 74.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 9.8e-122 440.7 247 84.6
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.3e-121 440.3 302 72.5
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.8e-121 439.1 242 86.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.8e-121 439.1 242 86.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 8.3e-121 437.6 302 72.5
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 8.3e-121 437.6 242 86.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 5.4e-120 434.9 300 73.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 5.4e-120 434.9 242 85.5
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 9.1e-120 434.1 243 86.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 9.1e-120 434.1 312 71.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.0e-119 433.0 240 85.8
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.0e-119 433.0 246 84.6
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.7e-119 432.6 301 75.4
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.7e-119 432.6 246 85.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.3e-118 430.3 244 83.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.3e-118 430.3 242 86.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-118 429.5 246 82.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.3e-118 429.5 246 82.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.3e-118 429.5 242 85.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.3e-118 429.5 278 77.3
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.3e-118 429.5 246 81.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-118 429.1 318 68.9
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.9e-118 429.1 282 74.8
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.9e-118 429.1 245 83.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.9e-118 429.1 243 83.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.8e-118 428.7 246 83.3
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 3.8e-118 428.7 280 77.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 5.0e-118 428.3 246 82.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 6.5e-118 427.9 243 83.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.5e-118 427.9 246 82.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 8.6e-118 427.6 277 76.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 8.6e-118 427.6 242 82.2
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 8.6e-118 427.6 309 70.2
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.9e-117 426.4 242 82.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.5e-117 426.0 244 81.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.2e-117 425.6 315 68.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 3.2e-117 425.6 243 82.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 3.2e-117 425.6 317 70.0
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.2e-117 425.2 307 70.0
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.2e-117 425.2 297 71.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.5e-117 424.9 242 84.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 7.2e-117 424.5 244 81.6
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 9.5e-117 424.1 246 82.1
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 9.5e-117 424.1 305 71.8
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.6e-116 423.3 309 74.4
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.8e-116 422.5 315 69.5
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.8e-116 422.5 248 80.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.8e-116 422.5 299 72.6
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.7e-116 421.8 242 81.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 4.7e-116 421.8 323 67.8
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 4.7e-116 421.8 249 80.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.0e-115 420.6 302 70.2
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.8e-115 419.9 245 80.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 3.0e-115 419.1 247 81.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 5.2e-115 418.3 242 82.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.2e-115 418.3 291 71.8
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 8.8e-115 417.5 262 76.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-114 417.2 332 65.1
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 7.5e-114 414.5 242 78.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.3e-113 413.7 313 67.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.8e-113 412.5 246 77.6
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.3e-113 411.4 247 78.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.1e-112 410.6 249 78.3
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-112 410.6 242 79.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.4e-112 410.2 242 80.6
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.1e-112 409.1 242 80.6
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 5.9e-111 404.8 246 79.3
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 6.6e-110 401.4 214 91.6
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.9e-109 399.8 292 69.9
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 5.6e-109 398.3 245 75.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 4.7e-108 395.2 247 74.9
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 6.1e-108 394.8 246 75.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 8.0e-108 394.4 251 74.1
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.0e-107 394.0 246 74.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.8e-107 393.3 247 75.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 6.8e-107 391.3 249 75.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 5.7e-106 388.3 242 75.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 4.9e-105 385.2 329 62.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.2e-103 380.6 257 73.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 8.6e-102 374.4 400 53.5
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.4e-99 367.1 246 73.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.8e-99 364.8 214 81.3
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 8.9e-99 364.4 242 72.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.3e-97 360.5 370 54.9
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.6e-95 353.6 212 76.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 7.8e-95 351.3 275 64.0
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.0e-94 350.9 245 70.6
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-93 347.4 310 63.5
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.9e-93 346.7 249 69.5
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.3e-91 339.7 246 69.9
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.5e-90 337.0 212 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 4.9e-89 332.0 238 64.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 9.2e-88 327.8 212 73.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.3e-86 323.9 244 61.5
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.6e-86 321.6 186 82.3
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.6e-79 300.4 231 66.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.1e-76 290.0 168 82.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.8e-75 287.0 212 62.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 6.0e-71 271.9 242 52.5
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-67 260.8 224 62.1
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.8e-67 260.4 182 69.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 5.3e-67 258.8 159 78.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 4.5e-66 255.8 170 71.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.9e-65 253.1 242 50.0
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 8.4e-65 251.5 251 51.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.0e-62 244.6 141 84.4
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-60 236.5 297 49.5
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.7e-60 236.1 192 63.5
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.8e-59 233.8 206 61.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 7.6e-58 228.4 242 43.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.5e-55 219.5 137 78.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.0e-54 218.0 137 75.2
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 4.8e-52 209.1 238 45.4
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 8.2e-52 208.4 137 70.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.5e-50 202.6 116 81.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.9e-49 199.1 164 60.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.5e-49 198.7 126 77.8
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.7e-47 193.4 110 80.0
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.6e-47 192.6 136 69.9
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.6e-47 192.6 136 69.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.7e-46 188.7 103 83.5
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-45 188.0 111 76.6
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.6e-44 184.1 110 80.9
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.4e-43 180.3 101 80.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-42 177.6 164 57.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.5e-42 176.0 239 38.5
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.1e-39 165.6 96 80.2
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.0e-38 163.3 236 39.4
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.3e-36 157.9 99 70.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.2e-34 151.4 236 36.4
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.2e-33 147.1 82 78.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 3.8e-33 146.4 77 85.7
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.5e-32 143.7 78 80.8
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.0e-30 136.7 76 80.3
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.5e-29 134.4 77 77.9
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.1e-27 126.7 67 83.6
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 4.7e-23 112.8 93 62.4
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.8e-22 110.9 56 82.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-22 110.2 59 86.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.1e-21 108.2 251 30.3
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.7e-21 105.9 56 80.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 8.2e-20 102.1 70 72.9
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.7e-17 94.4 47 85.1
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 3.8e-17 93.2 47 89.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.5e-16 90.5 48 81.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.5e-13 81.3 62 53.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.7e-13 79.3 114 38.6
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.6e-10 71.2 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 3.8e-09 66.6 108 36.1
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.7e-07 60.5 77 45.5


User provided reference genes

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