Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-122 444.1 529 100.0
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.9e-116 421.8 529 97.2
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.4e-114 415.2 529 96.2
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.4e-111 406.4 535 92.3
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 3.8e-102 376.3 529 95.1
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.5e-85 319.3 533 83.3
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.3e-65 252.3 545 65.0
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.3e-54 218.4 551 77.0
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.8e-42 176.4 102 90.2
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.3e-41 172.6 102 87.3
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.2e-40 170.6 99 89.9
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.6e-39 168.3 102 86.3
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.8e-35 152.9 84 92.9
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-34 151.8 84 92.9
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-34 151.8 84 92.9
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.4e-34 150.2 84 91.7
FAN25G0700 Fragaria x ananassa HOM05D000681 ORTHO05D012645 2.5e-21 107.8 98 64.3
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 3.3e-21 107.5 122 53.3
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 1.6e-20 105.1 122 54.1
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 1.5e-18 98.6 114 51.8
FAN22G1073 Fragaria x ananassa HOM05D000681 ORTHO05D012645 4.4e-18 97.1 86 65.1
FAN15G1461 Fragaria x ananassa HOM05D000681 ORTHO05D006108 4.9e-17 93.6 84 64.3
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 8.4e-17 92.8 112 50.0
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 8.4e-17 92.8 128 49.2
FAN06G3135 Fragaria x ananassa HOM05D000681 ORTHO05D011778 1.4e-16 92.0 84 63.1
FAN28G1994 Fragaria x ananassa HOM05D000681 ORTHO05D006108 1.4e-16 92.0 84 63.1
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.9e-16 91.7 125 48.8
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 4.2e-16 90.5 127 46.5
FAN25G1048 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.1e-16 89.7 84 61.9
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 9.3e-16 89.4 115 50.4
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 1.2e-15 89.0 112 47.3
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 2.1e-15 88.2 115 50.4
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 2.1e-15 88.2 115 50.4
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 2.1e-15 88.2 115 50.4
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 2.1e-15 88.2 120 45.0
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 2.1e-15 88.2 123 43.9
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 4.6e-15 87.0 115 49.6
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 4.6e-15 87.0 133 42.1
FAN06G3376 Fragaria x ananassa HOM05D000681 ORTHO05D012645 6.0e-15 86.7 79 63.3
FAN22G1082 Fragaria x ananassa HOM05D000681 ORTHO05D011778 6.0e-15 86.7 79 63.3
FAN24G0338 Fragaria x ananassa HOM05D000681 ORTHO05D011778 6.0e-15 86.7 79 63.3
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 2.3e-14 84.7 115 48.7
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 3.0e-14 84.3 82 53.7
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.0e-14 84.3 118 47.5
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 3.9e-14 84.0 108 48.1
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 5.1e-14 83.6 129 42.6
FAN06G1871 Fragaria x ananassa HOM05D000681 ORTHO05D003965 1.5e-13 82.0 77 62.3
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 1.9e-13 81.6 94 52.1
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 2.5e-13 81.3 184 34.8
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 4.3e-13 80.5 102 48.0
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 4.3e-13 80.5 102 48.0
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 4.3e-13 80.5 115 44.3
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 5.6e-13 80.1 136 39.7
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 1.3e-12 79.0 108 47.2
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.3e-12 79.0 108 48.1
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 1.3e-12 79.0 97 51.5
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 2.1e-12 78.2 137 35.8
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.1e-12 78.2 108 48.1
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.1e-12 78.2 108 47.2
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 2.8e-12 77.8 119 40.3
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 3.6e-12 77.4 143 39.2
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 4.8e-12 77.0 134 40.3
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 6.2e-12 76.6 108 46.3
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 6.2e-12 76.6 107 48.6
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 1.1e-11 75.9 97 44.3
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.8e-11 75.1 105 48.6
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 1.8e-11 75.1 88 53.4
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 2.4e-11 74.7 116 43.1
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 4.0e-11 73.9 107 45.8
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 6.9e-11 73.2 111 41.4
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 9.0e-11 72.8 100 47.0
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.0e-10 71.6 107 42.1
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 3.4e-10 70.9 138 40.6
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 4.5e-10 70.5 87 48.3
vmacro08809 Vaccinium macrocarpon HOM05D011389 ORTHO05D006108 5.8e-10 70.1 70 52.9
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 7.6e-10 69.7 88 46.6
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 9.9e-10 69.3 96 44.8
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 9.9e-10 69.3 96 47.9
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 1.3e-09 68.9 83 53.0
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 1.7e-09 68.6 89 47.2
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 1.7e-09 68.6 93 48.4
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 2.2e-09 68.2 96 46.9
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.2e-09 68.2 154 38.3
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.9e-09 67.8 83 48.2
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 3.8e-09 67.4 109 44.0
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.8e-09 67.4 113 44.2
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 4.9e-09 67.0 154 39.0
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 6.4e-09 66.6 98 44.9
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 8.4e-09 66.2 113 44.2
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.1e-08 65.9 99 42.4
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.1e-08 65.9 99 42.4
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 1.4e-08 65.5 111 44.1
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 1.4e-08 65.5 108 45.4
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 1.4e-08 65.5 111 44.1
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 1.4e-08 65.5 109 43.1
Manes.08G018000 Manihot esculenta HOM05D006485 ORTHO05D006108 1.4e-08 65.5 98 38.8
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 2.4e-08 64.7 154 37.0
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 2.4e-08 64.7 124 41.1
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 3.2e-08 64.3 94 43.6
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 3.2e-08 64.3 90 43.3
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 4.2e-08 63.9 113 38.1
Psat3g037480 Pisum sativum HOM05D013121 ORTHO05D015407 4.2e-08 63.9 135 37.8
Lj3A1005G41 Lonicera japonica HOM05D011389 ORTHO05D006108 5.4e-08 63.5 83 45.8
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 5.4e-08 63.5 105 38.1
Nn2g13931 Nelumbo nucifera HOM05D006485 ORTHO05D006108 9.3e-08 62.8 115 40.9
Nitab4.5_0011622g0020 Nicotiana tabacum HOM05D011389 ORTHO05D006108 9.3e-08 62.8 69 44.9
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 1.6e-07 62.0 55 54.5
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 1.6e-07 62.0 103 38.8
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 2.1e-07 61.6 119 38.7
PGSC0003DMG400020976 Solanum tuberosum HOM05D011389 ORTHO05D006108 2.1e-07 61.6 88 40.9
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 3.5e-07 60.8 96 44.8
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 4.6e-07 60.5 110 41.8
Lalb_Chr01g0018471 Lupinus albus HOM05D013121 ORTHO05D015407 4.6e-07 60.5 145 35.2
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 4.6e-07 60.5 107 44.9
Medtr7g103280 Medicago truncatula HOM05D013121 ORTHO05D015407 6.0e-07 60.1 132 36.4
Lj1g0021486 Lotus japonicus HOM05D013121 ORTHO05D015407 7.9e-07 59.7 152 36.8
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 7.9e-07 59.7 110 41.8
Solyc11g042800.2 Solanum lycopersicum HOM05D011389 ORTHO05D006108 7.9e-07 59.7 88 42.0
Sopen11g019160 Solanum pennellii HOM05D011389 ORTHO05D006108 7.9e-07 59.7 88 42.0
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 1.0e-06 59.3 84 46.4
Migut.C01359 Erythranthe guttata HOM05D011389 ORTHO05D006108 1.3e-06 58.9 65 47.7
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 1.3e-06 58.9 83 51.8
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 1.3e-06 58.9 69 43.5
TPR.G31495 Trifolium pratense HOM05D013121 ORTHO05D015407 1.8e-06 58.5 133 36.8
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 1.8e-06 58.5 96 40.6
Lsat_1_v5_gn_6_29041 Lactuca sativa HOM05D006485 ORTHO05D006108 2.3e-06 58.2 95 41.1
SGA_v2.0_scaffold118G32589 Striga asiatica HOM05D011389 ORTHO05D006108 3.0e-06 57.8 101 41.6
Lj5g0014301 Lotus japonicus HOM05D036014 ORTHO05D006108 3.9e-06 57.4 117 41.0
Os01g0276300 Oryza sativa ssp. japonica HOM05D057235 ORTHO05D049483 5.1e-06 57.0 112 33.0
PGR142G2869 Punica granatum HOM05D011389 ORTHO05D006108 5.1e-06 57.0 66 47.0
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 6.7e-06 56.6 137 36.5
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 6.7e-06 56.6 119 36.1


User provided reference genes

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