Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.5e-239 831.2 425 100.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.7e-238 828.9 425 99.8
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-238 828.9 425 99.8
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.4e-234 814.3 425 97.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.7e-234 813.9 425 97.6
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 5.4e-216 754.2 432 92.1
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.1e-191 672.5 437 82.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.5e-186 656.4 431 80.7
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.8e-186 654.4 432 81.5
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.4e-160 570.1 398 74.9
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 7.9e-159 564.3 429 71.3
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 7.9e-159 564.3 388 75.0
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 4.8e-156 555.1 435 71.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 5.3e-155 551.6 395 70.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.9e-154 548.1 389 72.8
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.3e-153 547.0 434 68.4
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.7e-153 546.6 393 72.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.6e-151 538.5 385 71.7
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 7.9e-151 537.7 431 69.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.0e-150 537.3 433 67.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 3.0e-150 535.8 388 72.7
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.5e-149 532.7 396 68.4
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.5e-149 532.7 436 66.1
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 5.7e-149 531.6 389 71.7
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 7.4e-149 531.2 432 66.7
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.3e-148 530.4 433 67.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 6.3e-148 528.1 430 67.4
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 8.2e-148 527.7 433 65.1
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 8.2e-148 527.7 390 70.8
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.1e-147 527.3 389 69.9
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 5.3e-147 525.0 435 68.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.2e-146 523.9 433 66.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.5e-146 523.5 433 66.3
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.5e-146 523.5 433 66.5
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.0e-146 523.1 433 66.1
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.0e-146 523.1 434 65.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.5e-146 521.9 388 68.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.5e-146 521.9 393 71.2
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.9e-146 521.5 395 69.9
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.3e-145 520.4 391 69.3
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.2e-145 519.6 442 66.1
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.9e-145 519.2 435 66.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.8e-145 518.8 430 67.7
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 8.5e-145 517.7 388 70.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.9e-144 516.5 431 67.1
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.2e-143 513.8 431 68.2
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 4.7e-143 511.9 434 67.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.9e-142 508.8 386 66.8
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 5.1e-142 508.4 408 64.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 5.1e-142 508.4 385 69.6
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.1e-141 507.3 437 65.0
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.1e-141 507.3 450 62.4
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.1e-141 507.3 388 67.8
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.5e-141 506.9 387 67.7
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 7.4e-141 504.6 429 67.1
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 9.7e-141 504.2 435 63.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 9.7e-141 504.2 391 67.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 3.7e-140 502.3 433 65.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 4.8e-140 501.9 385 68.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.3e-140 501.5 388 68.6
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.3e-140 501.5 391 69.1
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 6.3e-140 501.5 437 66.4
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.8e-139 500.0 434 64.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.2e-138 497.3 454 61.0
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.9e-138 495.0 429 64.3
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.7e-137 493.4 392 66.1
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.8e-137 492.3 392 65.6
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 5.0e-137 491.9 437 65.4
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.1e-136 490.7 440 63.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 3.2e-136 489.2 436 61.7
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 7.2e-136 488.0 397 65.2
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.2e-135 487.3 397 66.0
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 3.9e-134 482.3 384 66.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.4e-133 478.0 387 65.9
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 9.7e-133 477.6 435 63.4
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.3e-132 477.2 384 64.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.2e-132 476.5 427 63.5
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.2e-132 476.5 384 66.7
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.8e-131 473.4 387 64.1
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.1e-131 472.6 428 63.3
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.1e-131 472.2 385 65.2
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 3.5e-130 469.2 440 62.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.7e-130 468.0 359 67.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.3e-129 467.2 386 64.8
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.7e-129 466.8 386 65.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.7e-129 466.8 391 64.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 2.2e-129 466.5 386 64.5
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 8.5e-129 464.5 386 64.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.9e-128 463.4 386 64.5
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.5e-128 463.0 431 61.5
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 4.2e-128 462.2 388 63.7
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 7.2e-128 461.5 386 64.2
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 7.2e-128 461.5 386 64.2
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 7.2e-128 461.5 379 67.0
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.6e-127 460.3 432 60.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.1e-127 459.9 384 63.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.8e-126 454.5 387 63.0
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 8.8e-126 454.5 427 60.7
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 9.7e-125 451.1 442 57.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 3.7e-124 449.1 383 61.1
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 8.2e-124 448.0 386 61.7
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 8.2e-124 448.0 446 57.8
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.0e-122 443.4 385 62.9
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.7e-121 440.3 385 61.0
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.9e-120 436.8 389 61.2
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.9e-120 436.8 432 59.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 8.8e-118 427.9 392 61.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 8.8e-118 427.9 394 59.4
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.6e-117 426.4 387 59.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-115 421.0 433 55.4
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 3.1e-115 419.5 387 59.2
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.4e-115 418.7 319 67.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.5e-114 416.0 434 54.4
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.6e-113 411.8 434 54.4
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.7e-109 398.7 378 58.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.8e-108 396.4 378 58.7
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 8.3e-108 394.8 412 55.3
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 7.8e-106 388.3 383 57.7
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.7e-105 387.1 382 56.3
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 5.2e-102 375.6 308 64.3
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.4e-99 365.5 392 51.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 6.8e-94 348.6 429 50.3
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 6.8e-86 322.0 240 68.3
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.9e-86 321.6 340 52.9
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 4.2e-67 259.6 398 41.0
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.3e-65 254.6 235 54.9
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.6e-65 252.3 302 49.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.6e-63 247.7 237 58.6
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.1e-62 245.0 224 56.7
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.9e-57 226.5 204 59.8
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.1e-55 220.7 155 73.5
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.9e-51 207.6 193 67.4
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.3e-51 205.3 193 65.8
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 3.0e-49 200.3 148 75.7
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.7e-47 193.4 210 55.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.4e-43 181.4 355 34.6
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 6.7e-41 172.6 306 35.3
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.3e-20 105.1 114 52.6
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.2e-17 93.2 67 65.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 9.7e-16 89.0 76 57.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.2e-09 66.6 160 30.6
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 3.4e-08 63.9 36 69.4
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.4e-06 57.8 102 39.2
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 2.4e-06 57.8 131 35.9


User provided reference genes

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