Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 2.4e-198 695.3 348 100.0
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 2.4e-198 695.3 348 100.0
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.1e-187 659.8 348 95.4
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 9.0e-185 650.2 349 94.0
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.2e-184 649.8 349 94.0
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 5.8e-176 620.9 351 88.0
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 5.6e-171 604.4 350 84.3
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 2.1e-165 585.9 352 81.0
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 6.0e-165 584.3 352 81.0
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.5e-163 579.7 356 78.9
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 2.8e-162 575.5 351 80.3
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 3.7e-162 575.1 349 78.8
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 1.1e-161 573.5 354 79.9
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 5.3e-161 571.2 355 78.0
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 6.9e-161 570.9 349 79.1
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 9.0e-161 570.5 349 78.5
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 1.2e-160 570.1 353 77.6
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 4.5e-160 568.2 361 77.8
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 2.2e-159 565.8 348 78.4
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 5.0e-159 564.7 357 76.5
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 6.5e-159 564.3 351 77.8
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 6.5e-159 564.3 353 77.6
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.9e-158 562.8 361 77.0
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 1.9e-158 562.8 353 75.9
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.9e-158 562.8 349 77.1
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 2.5e-158 562.4 358 76.3
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 2.5e-158 562.4 355 76.9
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 2.5e-158 562.4 350 77.7
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 7.2e-158 560.8 355 76.6
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 7.2e-158 560.8 350 77.7
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 7.2e-158 560.8 354 76.3
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 6.1e-157 557.8 352 76.1
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 7.9e-157 557.4 348 76.1
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 2.5e-155 552.4 353 75.4
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.5e-155 552.4 355 74.6
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 5.7e-155 551.2 352 74.4
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 9.7e-155 550.4 352 75.3
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 1.6e-154 549.7 348 75.3
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 4.1e-153 545.0 351 73.5
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 9.0e-153 543.9 352 74.4
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 5.9e-152 541.2 361 71.2
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.0e-151 540.4 357 73.7
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.7e-151 539.7 351 73.5
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 4.2e-150 535.0 349 74.5
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.2e-150 535.0 350 72.9
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 5.5e-150 534.6 349 73.1
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 1.2e-149 533.5 363 70.0
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 1.6e-149 533.1 363 70.0
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.1e-149 532.7 359 73.3
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 2.1e-149 532.7 352 71.3
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 4.6e-149 531.6 358 71.5
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 6.1e-149 531.2 362 69.9
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 6.1e-149 531.2 355 71.3
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 1.0e-148 530.4 349 71.9
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 1.0e-148 530.4 358 72.3
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 1.4e-148 530.0 356 71.9
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.4e-148 530.0 352 72.4
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.4e-148 530.0 352 70.7
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 1.8e-148 529.6 365 70.7
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 2.3e-148 529.3 348 72.7
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 3.0e-148 528.9 352 71.9
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 3.9e-148 528.5 349 72.2
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 6.7e-148 527.7 351 73.2
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 6.7e-148 527.7 356 70.2
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 8.8e-148 527.3 349 71.1
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 3.3e-147 525.4 351 70.9
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 4.3e-147 525.0 355 70.7
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 5.7e-147 524.6 357 71.7
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.4e-147 524.2 350 72.3
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 9.7e-147 523.9 354 71.8
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 2.2e-146 522.7 351 70.4
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 2.8e-146 522.3 348 70.7
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 8.2e-146 520.8 348 71.8
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 8.2e-146 520.8 362 68.5
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.1e-145 520.4 356 71.3
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.4e-145 520.0 355 70.1
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 3.1e-145 518.8 353 71.1
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 2.0e-144 516.2 342 71.1
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 2.0e-144 516.2 353 69.1
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 3.4e-144 515.4 361 69.5
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 7.7e-144 514.2 352 69.3
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.0e-143 513.8 348 69.5
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 1.7e-143 513.1 360 69.4
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 2.2e-143 512.7 356 69.9
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 3.8e-143 511.9 361 67.3
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 6.5e-143 511.1 358 69.0
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 8.5e-143 510.8 355 69.9
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 1.1e-142 510.4 349 68.8
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.4e-142 510.0 349 70.2
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 1.4e-142 510.0 358 70.4
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.9e-142 509.6 360 68.9
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 1.9e-142 509.6 363 67.5
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 2.5e-142 509.2 355 69.3
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 2.5e-142 509.2 355 69.9
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 3.2e-142 508.8 348 69.5
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 4.2e-142 508.4 350 69.7
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 5.5e-142 508.1 352 69.6
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 7.2e-142 507.7 356 69.1
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 7.2e-142 507.7 348 69.0
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 7.2e-142 507.7 348 69.8
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.6e-141 506.5 353 69.1
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 1.6e-141 506.5 355 70.1
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 4.7e-141 505.0 356 68.3
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 6.1e-141 504.6 355 67.9
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 7.9e-141 504.2 398 63.1
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.4e-140 503.4 357 67.5
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 2.6e-139 499.2 364 66.5
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 4.4e-139 498.4 349 68.2
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 9.7e-139 497.3 358 68.2
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 2.8e-138 495.7 351 69.2
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.8e-138 495.7 351 68.4
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 4.8e-138 495.0 353 68.6
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 4.5e-136 488.4 349 66.5
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 7.7e-136 487.6 334 70.1
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.6e-133 478.8 348 67.8
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 6.1e-133 478.0 355 67.6
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 1.4e-132 476.9 351 65.0
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 5.2e-132 474.9 365 64.4
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 1.3e-130 470.3 355 65.1
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.8e-129 466.5 351 63.5
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 9.1e-129 464.2 359 62.4
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 9.1e-129 464.2 353 62.3
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.6e-128 463.4 353 63.7
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 1.6e-128 463.4 336 66.1
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 2.7e-128 462.6 356 62.9
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 7.2e-126 454.5 361 62.3
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 1.6e-125 453.4 351 64.4
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.8e-124 449.9 348 60.9
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 6.8e-124 448.0 349 61.9
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.1e-121 440.7 303 71.6
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.0e-119 434.1 294 73.5
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 8.3e-114 414.5 294 68.7
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.3e-110 402.5 351 60.1
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 3.0e-108 396.0 327 62.7
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 5.9e-104 381.7 291 64.3
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 5.9e-104 381.7 350 56.9
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.5e-99 367.1 271 67.5
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.1e-80 303.5 214 72.4
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 1.4e-76 290.8 349 43.8
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 6.0e-72 275.4 272 52.6
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 9.6e-70 268.1 244 59.8
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.1e-68 264.6 156 76.9
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 6.4e-66 255.4 351 42.7
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.3e-62 242.7 175 71.4
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 1.4e-60 237.7 356 36.0
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.4e-52 210.3 115 83.5
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.4e-52 210.3 144 69.4
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.4e-52 210.3 126 77.0
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.4e-33 145.2 85 72.9
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 1.6e-32 144.4 138 53.6
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.1e-32 144.1 85 72.9
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.6e-32 142.9 85 71.8
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 4.6e-32 142.9 166 51.2
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 8.8e-31 138.7 85 70.6
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 2.0e-30 137.5 130 56.9
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 9.1e-28 128.6 182 44.0
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 5.0e-26 122.9 106 59.4
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 1.0e-23 115.2 185 41.1
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 2.3e-23 114.0 166 36.7
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 8.2e-21 105.5 62 75.8
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 4.1e-20 103.2 63 74.6
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 9.1e-20 102.1 58 79.3
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 9.1e-20 102.1 58 79.3
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 2.9e-18 97.1 74 60.8
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.2e-17 93.2 59 71.2
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 7.2e-17 92.4 76 60.5
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 9.4e-17 92.0 80 57.5
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.2e-16 91.7 60 68.3
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 2.1e-16 90.9 55 74.5
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 3.7e-13 80.1 149 29.5
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 8.2e-13 79.0 37 81.1
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 1.4e-12 78.2 64 54.7
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 1.8e-12 77.8 73 46.6
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 4.1e-12 76.6 49 61.2
MCO13G471 Micromonas commoda HOM05D003641 ORTHO05D049026 2.9e-10 70.5 175 32.0
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 2.9e-10 70.5 82 43.9
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 1.6e-08 64.7 161 28.0
Sopen02g001110 Solanum pennellii HOM05D003641 ORTHO05D004915 8.0e-08 62.4 94 45.7
arahy.Tifrunner.gnm1.ann1.5I9U23 Arachis hypogaea HOM05D003641 ORTHO05D085625 1.0e-07 62.0 121 41.3
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 1.8e-07 61.2 50 52.0
SGA_v2.0_scaffold196G40950 Striga asiatica HOM05D003641 ORTHO05D403144 5.7e-06 56.2 53 45.3


User provided reference genes

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