Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4274 Fragaria x ananassa HOM05D000289 ORTHO05D031703 1.8e-27 125.2 61 100.0
FAN14G0090 Fragaria x ananassa HOM05D000289 ORTHO05D031703 1.8e-27 125.2 61 100.0
FvH4_6g38910 Fragaria vesca HOM05D000289 ORTHO05D000208 2.3e-27 124.8 60 100.0
FAN09G3995 Fragaria x ananassa HOM05D000289 ORTHO05D000208 7.4e-26 119.8 60 96.7
RcHm_v2.0_Chr2g0152491 Rosa chinensis HOM05D000289 ORTHO05D000208 7.6e-23 109.8 61 90.2
Prupe.3G179500 Prunus persica HOM05D000289 ORTHO05D000208 3.2e-21 104.4 61 83.6
Haze_13606 Corylus avellana HOM05D000289 ORTHO05D000208 3.3e-18 94.4 60 73.3
PGR042G2225 Punica granatum HOM05D000289 ORTHO05D000208 3.7e-17 90.9 61 75.4
Cfa023024 Carpinus fangiana HOM05D000289 ORTHO05D000208 4.8e-17 90.5 61 72.1
Nitab4.5_0014487g0010 Nicotiana tabacum HOM05D000289 ORTHO05D000208 3.1e-16 87.8 61 72.1
Peaxi162Scf00359g01219 Petunia axillaris HOM05D000289 ORTHO05D000208 6.9e-16 86.7 61 70.5
Gohir.A10G151700 Gossypium hirsutum HOM05D000289 ORTHO05D000208 1.5e-15 85.5 61 68.9
Dinv15653 Davidia involucrata HOM05D000289 ORTHO05D000208 2.0e-15 85.1 61 70.5
Duzib187G1887 Durio zibethinus HOM05D000289 ORTHO05D000208 2.6e-15 84.7 61 67.2
Duzib147G1028 Durio zibethinus HOM05D000289 ORTHO05D000208 3.4e-15 84.3 61 65.6
Nitab4.5_0001552g0140 Nicotiana tabacum HOM05D000289 ORTHO05D000208 3.4e-15 84.3 61 68.9
Thecc.01G166500 Theobroma cacao HOM05D000289 ORTHO05D000208 4.5e-15 84.0 61 67.2
Cc00_g05870 Coffea canephora HOM05D000289 ORTHO05D000208 7.7e-15 83.2 61 67.2
Lalb_Chr10g0106471 Lupinus albus HOM05D000289 ORTHO05D000208 1.0e-14 82.8 61 70.5
MD17G1132800 Malus domestica HOM05D000289 ORTHO05D000208 1.0e-14 82.8 62 69.4
Glyma.08G304100 Glycine max HOM05D000289 ORTHO05D000208 1.7e-14 82.0 60 68.3
Aqoxy1G01601 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 2.2e-14 81.6 61 65.6
Medtr3g449880 Medicago truncatula HOM05D000289 ORTHO05D000208 2.2e-14 81.6 60 66.7
Sabra02G0045100 Salix brachista HOM05D000289 ORTHO05D000208 2.2e-14 81.6 61 67.2
PGSC0003DMG400000932 Solanum tuberosum HOM05D000289 ORTHO05D000208 2.2e-14 81.6 67 64.2
Hma1.2p1_0910F.1_g235860 Hydrangea macrophylla HOM05D000289 ORTHO05D000208 2.9e-14 81.3 61 63.9
DCAR_016936 Daucus carota HOM05D000289 ORTHO05D009494 3.8e-14 80.9 61 65.6
Glyma.18G115300 Glycine max HOM05D000289 ORTHO05D000208 3.8e-14 80.9 60 66.7
SGA_v2.0_scaffold181G39724 Striga asiatica HOM05D000289 ORTHO05D000208 3.8e-14 80.9 61 63.9
ClCG07G010810 Citrullus lanatus HOM05D000289 ORTHO05D000208 5.0e-14 80.5 62 67.7
LjContig00049g0027395 Lotus japonicus HOM05D000289 ORTHO05D000208 5.0e-14 80.5 60 63.3
Peaxi162Scf00047g02228 Petunia axillaris HOM05D000289 ORTHO05D000208 5.0e-14 80.5 61 60.7
Phvul.008G196600 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 5.0e-14 80.5 60 68.3
Gohir.D10G114600 Gossypium hirsutum HOM05D000289 ORTHO05D000208 6.5e-14 80.1 61 67.2
Gorai.011G126300 Gossypium raimondii HOM05D000289 ORTHO05D000208 6.5e-14 80.1 61 67.2
MD09G1146200 Malus domestica HOM05D000289 ORTHO05D000208 6.5e-14 80.1 60 65.0
PSO455G0249 Papaver somniferum HOM05D000289 ORTHO05D000208 6.5e-14 80.1 63 66.7
TWI59G1316 Tripterygium wilfordii HOM05D000289 ORTHO05D000208 8.5e-14 79.7 61 68.9
vmacro08743 Vaccinium macrocarpon HOM05D000289 ORTHO05D000208 8.5e-14 79.7 61 60.7
VMungo0647G1445 Vigna mungo HOM05D000289 ORTHO05D000208 8.5e-14 79.7 60 68.3
CiPaw.04G137100 Carya illinoinensis HOM05D000289 ORTHO05D000208 1.1e-13 79.3 61 68.9
Ciclev10032550m.g Citrus clementina HOM05D000289 ORTHO05D000208 1.4e-13 79.0 61 60.7
TWI14G0504 Tripterygium wilfordii HOM05D000289 ORTHO05D000208 1.4e-13 79.0 61 68.9
COL.COLO4_29890 Corchorus olitorius HOM05D000289 ORTHO05D000208 1.9e-13 78.6 64 62.5
Glyma.14G031900 Glycine max HOM05D000289 ORTHO05D000208 1.9e-13 78.6 60 68.3
PSO170G0951 Papaver somniferum HOM05D000289 ORTHO05D000208 1.9e-13 78.6 63 65.1
Potri.005G206800 Populus trichocarpa HOM05D000289 ORTHO05D000208 1.9e-13 78.6 61 65.6
Eucgr.H02651 Eucalyptus grandis HOM05D000289 ORTHO05D000208 2.5e-13 78.2 61 65.6
Nitab4.5_0003208g0020 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.5e-13 78.2 61 62.3
Nitab4.5_0007694g0020 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.5e-13 78.2 61 62.3
Potri.002G055600 Populus trichocarpa HOM05D000289 ORTHO05D000208 2.5e-13 78.2 61 63.9
CANSAT64G2330 Cannabis sativa HOM05D000289 ORTHO05D000208 3.2e-13 77.8 54 70.4
Glyma.02G282400 Glycine max HOM05D000289 ORTHO05D000208 3.2e-13 77.8 60 66.7
Solyc07g044880.3 Solanum lycopersicum HOM05D000289 ORTHO05D000208 3.2e-13 77.8 67 62.7
Solyc12g006290.2 Solanum lycopersicum HOM05D000289 ORTHO05D000208 3.2e-13 77.8 61 60.7
VMungo0540G0615 Vigna mungo HOM05D000289 ORTHO05D000208 3.2e-13 77.8 60 61.7
CAN.G1500.4 Capsicum annuum HOM05D000289 ORTHO05D000208 4.2e-13 77.4 61 60.7
Psat5g189200 Pisum sativum HOM05D000289 ORTHO05D000208 4.2e-13 77.4 60 63.3
Migut.M00113 Erythranthe guttata HOM05D000289 ORTHO05D000208 5.5e-13 77.0 61 60.7
Phvul.006G028000 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 7.2e-13 76.6 60 63.3
Sopen07g023440 Solanum pennellii HOM05D000289 ORTHO05D000208 7.2e-13 76.6 67 61.2
Sopen12g002240 Solanum pennellii HOM05D000289 ORTHO05D000208 9.4e-13 76.3 61 59.0
QL08p045543 Quercus lobata HOM05D000289 ORTHO05D000208 1.2e-12 75.9 60 60.0
Atru.chr6.2015 Acer truncatum HOM05D000289 ORTHO05D000208 1.6e-12 75.5 61 65.6
Lj8A99T66 Lonicera japonica HOM05D000289 ORTHO05D000208 1.6e-12 75.5 61 60.7
TPR.G14760 Trifolium pratense HOM05D000289 ORTHO05D000208 1.6e-12 75.5 60 63.3
GSVIVG01020817001 Vitis vinifera HOM05D000289 ORTHO05D000208 1.6e-12 75.5 61 60.7
Ca_13942_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 2.1e-12 75.1 60 63.3
CsaV3_4G007510 Cucumis sativus L. HOM05D000289 ORTHO05D000208 2.1e-12 75.1 62 62.9
Manes.01G131400 Manihot esculenta HOM05D000289 ORTHO05D000208 2.1e-12 75.1 61 63.9
TAR626G1852 Trochodendron aralioides HOM05D000289 ORTHO05D000208 2.1e-12 75.1 61 62.3
CSS0036118 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 2.7e-12 74.7 61 65.6
Sed0014502 Sechium edule HOM05D000289 ORTHO05D000208 2.7e-12 74.7 62 59.7
MELO3C016191.2 Cucumis melo HOM05D000289 ORTHO05D000208 4.6e-12 73.9 62 62.9
Lsat_1_v5_gn_3_35581 Lactuca sativa HOM05D000289 ORTHO05D000208 6.1e-12 73.6 63 60.3
Manes.02G090000 Manihot esculenta HOM05D000289 ORTHO05D000208 7.9e-12 73.2 61 62.3
PGSC0003DMG400028815 Solanum tuberosum HOM05D000289 ORTHO05D000208 7.9e-12 73.2 61 57.4
arahy.Tifrunner.gnm1.ann1.A6G0ZJ Arachis hypogaea HOM05D000289 ORTHO05D000208 1.8e-11 72.0 60 61.7
arahy.Tifrunner.gnm1.ann1.XPA4R4 Arachis hypogaea HOM05D000289 ORTHO05D000208 1.8e-11 72.0 60 61.7
SalBow7G0348 Salvia bowleyana HOM05D000289 ORTHO05D000208 1.8e-11 72.0 61 57.4
EL10Ac9g22868 Beta vulgaris HOM05D000289 ORTHO05D000208 2.3e-11 71.6 61 62.3
TAR627G0981 Trochodendron aralioides HOM05D000289 ORTHO05D000208 3.0e-11 71.2 61 59.0
Psat2g018320 Pisum sativum HOM05D000289 ORTHO05D000208 6.7e-11 70.1 61 60.7
Sabra05G0157300 Salix brachista HOM05D000289 ORTHO05D000208 8.8e-11 69.7 61 57.4
EL10Ac3g06376 Beta vulgaris HOM05D000289 ORTHO05D031703 1.1e-10 69.3 60 60.0
Rhsim12G0013600 Rhododendron simsii HOM05D000289 ORTHO05D000208 1.5e-10 68.9 74 50.0
HanXRQChr17g0544881 Helianthus annuus HOM05D000289 ORTHO05D000208 2.0e-10 68.6 62 54.8
Thhalv10021400m.g Eutrema salsugineum HOM05D000289 ORTHO05D000208 3.3e-10 67.8 61 54.1
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 4.4e-10 67.4 61 54.1
AUR62015165 Chenopodium quinoa HOM05D000289 ORTHO05D000208 4.4e-10 67.4 61 52.5
Ah.01g013260 Amaranthus hybridus HOM05D000289 ORTHO05D000208 5.7e-10 67.0 61 54.1
HanXRQChr06g0171491 Helianthus annuus HOM05D000289 ORTHO05D000208 5.7e-10 67.0 61 55.7
Ca_06234_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 9.7e-10 66.2 60 56.7
Lj1A651T47 Lonicera japonica HOM05D000289 ORTHO05D000208 9.7e-10 66.2 62 58.1
ATR1098G022 Amborella trichopoda HOM05D000289 ORTHO05D000208 2.2e-09 65.1 61 54.1
ECA246G3534 Erigeron canadensis HOM05D000289 ORTHO05D000208 2.2e-09 65.1 61 54.1
Medtr5g090340 Medicago truncatula HOM05D000289 ORTHO05D000208 2.2e-09 65.1 60 55.0
BcaC09g48104 Brassica carinata HOM05D000671 ORTHO05D000797 4.8e-09 63.9 61 52.5
BolC1t05410H Brassica oleracea HOM05D000289 ORTHO05D000208 4.8e-09 63.9 61 52.5
BcaB04g21219 Brassica carinata HOM05D000671 ORTHO05D000797 6.3e-09 63.5 61 50.8
MSTRG.14107 Avicennia marina HOM05D000289 ORTHO05D000208 8.2e-09 63.2 61 52.5
Carub.0003s0944 Capsella rubella HOM05D000289 ORTHO05D000208 8.2e-09 63.2 61 52.5
CARHR084740 Cardamine hirsuta HOM05D000289 ORTHO05D000208 1.1e-08 62.8 61 50.8
A01p41930 Brassica napus HOM05D000671 ORTHO05D000797 1.8e-08 62.0 61 49.2
BraA01t04262Z Brassica rapa HOM05D000671 ORTHO05D000797 1.8e-08 62.0 61 49.2
Oeu007465.1 Olea europaea HOM05D000289 ORTHO05D000208 1.8e-08 62.0 58 51.7
Lj6g0010418 Lotus japonicus HOM05D000289 ORTHO05D000208 2.4e-08 61.6 60 55.0
THA.LOC104823208 Tarenaya hassleriana HOM05D000289 ORTHO05D000208 5.3e-08 60.5 60 51.7
unitig_52.g17322 Utricularia gibba HOM05D000289 ORTHO05D000208 6.9e-08 60.1 39 69.2
Sed0014640 Sechium edule HOM05D000289 ORTHO05D000208 9.1e-08 59.7 62 51.6
PGR142G1444 Punica granatum HOM05D000289 ORTHO05D000208 1.5e-07 58.9 55 52.7
SEGI_15957 Sequoiadendron giganteum HOM05D000289 ORTHO05D000208 1.5e-07 58.9 72 47.2
AL3G21590 Arabidopsis lyrata HOM05D000289 ORTHO05D000208 2.0e-07 58.5 61 50.8
CDE05G2465 Ceratophyllum demersum HOM05D000289 ORTHO05D000208 2.6e-07 58.2 63 54.0
AT3G10260 Arabidopsis thaliana HOM05D000289 ORTHO05D000208 5.9e-07 57.0 61 49.2
Eucgr.A02040 Eucalyptus grandis HOM05D000289 ORTHO05D000208 5.9e-07 57.0 39 64.1
Aa31LG3G2840 Aethionema arabicum HOM05D000289 ORTHO05D000208 7.7e-07 56.6 61 44.3
MBI02_g08988_MAGBIO Magnolia biondii HOM05D000289 ORTHO05D000208 7.7e-07 56.6 60 51.7
AUR62017617 Chenopodium quinoa HOM05D000289 ORTHO05D000208 1.7e-06 55.5 54 50.0
SHI10527 Sapria himalayana HOM05D000289 ORTHO05D000208 1.7e-06 55.5 61 45.9
DCAR_023038 Daucus carota HOM05D000289 ORTHO05D000208 2.9e-06 54.7 63 44.4
TPR.G8772 Trifolium pratense HOM05D000289 ORTHO05D000208 2.9e-06 54.7 87 40.2
BcaNung05528 Brassica carinata HOM05D000289 ORTHO05D000208 5.0e-06 53.9 63 41.3
HanXRQChr03g0091311 Helianthus annuus HOM05D000289 ORTHO05D223673 6.5e-06 53.5 42 59.5
THA.LOC104816411 Tarenaya hassleriana HOM05D000289 ORTHO05D000208 6.5e-06 53.5 61 45.9


User provided reference genes

Program Settings