Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3330 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.7e-280 968.8 521 100.0
FAN23G0398 Fragaria x ananassa HOM05D008485 ORTHO05D009647 6.1e-278 960.3 521 99.4
FAN23G3051 Fragaria x ananassa HOM05D008485 ORTHO05D009647 5.7e-268 927.2 507 99.0
FAN11G3939 Fragaria x ananassa HOM05D008485 ORTHO05D009647 4.2e-194 681.8 379 97.9
FAN10G1422 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.9e-168 595.5 300 98.3
FAN13G0756 Fragaria x ananassa HOM05D008485 ORTHO05D009647 7.4e-167 591.3 298 98.7
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 7.7e-156 554.7 344 79.1
FAN16G1636 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.7e-110 402.9 243 98.4
FAN16G1989 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.3e-107 393.7 207 98.6
FvH4_1g18340 Fragaria vesca HOM05D008485 ORTHO05D009647 3.9e-107 392.9 262 77.9
FvH4_3g05430 Fragaria vesca HOM05D008485 ORTHO05D009647 1.1e-106 391.3 262 77.5
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 1.7e-102 377.5 213 79.8
FAN17G2617 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.1e-81 307.4 185 81.6
RcHm_v2.0_Chr5g0070861 Rosa chinensis HOM05D008485 ORTHO05D009647 6.9e-72 275.8 272 51.8
RcHm_v2.0_Chr5g0025151 Rosa chinensis HOM05D008485 ORTHO05D009647 6.4e-70 269.2 281 45.9
FAN04G2058 Fragaria x ananassa HOM05D008485 ORTHO05D009647 7.9e-68 262.3 140 98.6
FAN15G1508 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.9e-67 260.0 140 97.9
RcHm_v2.0_Chr4g0434301 Rosa chinensis HOM05D008485 ORTHO05D009647 1.4e-64 251.5 259 48.6
RcHm_v2.0_Chr4g0403221 Rosa chinensis HOM05D008485 ORTHO05D009647 4.0e-64 250.0 259 48.6
FAN10G2796 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.2e-63 248.4 140 95.0
RcHm_v2.0_Chr5g0029021 Rosa chinensis HOM05D008485 ORTHO05D009647 2.0e-63 247.7 251 51.8
RcHm_v2.0_Chr5g0036581 Rosa chinensis HOM05D008485 ORTHO05D009647 5.7e-58 229.6 221 53.8
FAN01G1265 Fragaria x ananassa HOM05D008485 ORTHO05D009647 4.2e-53 213.4 170 71.8
FvH4_3g43970 Fragaria vesca HOM05D008485 ORTHO05D009647 9.0e-48 195.7 136 77.2
FAN10G0930 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.2e-47 195.3 156 71.2
RcHm_v2.0_Chr5g0041581 Rosa chinensis HOM05D008485 ORTHO05D009647 1.3e-46 191.8 218 48.2
RcHm_v2.0_Chr2g0094421 Rosa chinensis HOM05D008485 ORTHO05D009647 1.2e-44 185.3 234 41.5
RcHm_v2.0_Chr7g0208561 Rosa chinensis HOM05D008485 ORTHO05D009647 5.3e-40 169.9 211 41.7
FAN02G1844 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.1e-37 162.2 118 77.1
FAN10G2059 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.1e-36 157.9 77 89.6
RcHm_v2.0_Chr1g0341051 Rosa chinensis HOM05D008485 ORTHO05D009647 5.1e-35 153.3 142 55.6
FvH4_3g26318 Fragaria vesca HOM05D008485 ORTHO05D009647 8.8e-35 152.5 99 79.8
RcHm_v2.0_Chr1g0381361 Rosa chinensis HOM05D016653 ORTHO05D009647 5.7e-34 149.8 301 30.6
RcHm_v2.0_Chr7g0208571 Rosa chinensis HOM05D008485 ORTHO05D009647 1.3e-33 148.7 181 45.9
FvH4_6g20331 Fragaria vesca HOM05D008485 ORTHO05D009647 6.1e-28 129.8 105 68.6
FvH4_2g08421 Fragaria vesca HOM05D008485 ORTHO05D009647 1.5e-26 125.2 137 59.1
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 4.4e-26 123.6 274 29.9
FAN28G2311 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.3e-25 122.1 331 29.0
RcHm_v2.0_Chr5g0059931 Rosa chinensis HOM05D008485 ORTHO05D009647 2.8e-25 120.9 155 43.9
FAN07G2263 Fragaria x ananassa HOM05D011706 ORTHO05D009647 3.7e-25 120.6 308 27.9
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 8.2e-25 119.4 248 28.2
RcHm_v2.0_Chr2g0086631 Rosa chinensis HOM05D002291 ORTHO05D000222 1.4e-24 118.6 327 27.2
FAN19G1637 Fragaria x ananassa HOM05D002291 ORTHO05D000222 7.0e-24 116.3 374 27.5
RcHm_v2.0_Chr3g0477491 Rosa chinensis HOM05D009879 ORTHO05D009647 7.0e-24 116.3 200 31.5
FAN08G2448 Fragaria x ananassa HOM05D008485 ORTHO05D009647 9.1e-24 115.9 135 57.8
RcHm_v2.0_Chr7g0206051 Rosa chinensis HOM05D008485 ORTHO05D009647 2.0e-23 114.8 99 55.6
FvH4_6g23072 Fragaria vesca HOM05D009879 ORTHO05D009647 5.9e-23 113.2 215 32.1
RcHm_v2.0_Chr5g0007651 Rosa chinensis HOM05D009879 ORTHO05D009647 1.7e-22 111.7 183 30.6
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 2.9e-22 110.9 246 28.0
RcHm_v2.0_Chr5g0040531 Rosa chinensis HOM05D009879 ORTHO05D009647 5.0e-22 110.2 208 28.8
FAN18G0028 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.2e-21 107.1 244 29.1
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 5.5e-21 106.7 176 33.5
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 2.7e-20 104.4 231 29.0
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.4e-19 102.1 330 25.2
FAN17G2464 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.0e-19 100.5 295 26.1
MELO3C031804.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.2e-19 100.1 330 27.6
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 6.8e-19 99.8 250 28.8
RcHm_v2.0_Chr5g0076701 Rosa chinensis HOM05D008485 ORTHO05D009647 8.8e-19 99.4 105 42.9
MD16G1222400 Malus domestica HOM05D000514 ORTHO05D000222 2.6e-18 97.8 379 25.3
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 5.7e-18 96.7 287 27.2
FAN06G0059 Fragaria x ananassa HOM05D009879 ORTHO05D009647 7.5e-18 96.3 220 28.6
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.7e-17 95.1 220 28.2
RcHm_v2.0_Chr1g0332631 Rosa chinensis HOM05D009879 ORTHO05D009647 2.2e-17 94.7 161 30.4
RcHm_v2.0_Chr6g0272081 Rosa chinensis HOM05D008485 ORTHO05D009647 2.2e-17 94.7 105 41.0
FAN21G1637 Fragaria x ananassa HOM05D008485 ORTHO05D009647 6.3e-17 93.2 52 84.6
RcHm_v2.0_Chr7g0206041 Rosa chinensis HOM05D008485 ORTHO05D009647 8.3e-17 92.8 111 43.2
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 5.4e-16 90.1 251 28.3
MD03G1062700 Malus domestica HOM05D000514 ORTHO05D000222 9.1e-16 89.4 281 25.6
MD12G1110400 Malus domestica HOM05D000514 ORTHO05D000222 2.0e-15 88.2 286 24.1
FAN14G0548 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.5e-15 87.0 288 28.8
FAN16G0255 Fragaria x ananassa HOM05D002052 ORTHO05D000222 5.9e-15 86.7 320 28.1
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 7.7e-15 86.3 216 28.2
FAN15G1885 Fragaria x ananassa HOM05D002052 ORTHO05D000222 7.7e-15 86.3 320 28.1
FAN15G0006 Fragaria x ananassa HOM05D002052 ORTHO05D000222 1.3e-14 85.5 322 28.6
MBI19_g18856_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-14 85.5 351 24.5
FAN06G3008 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.2e-14 84.7 320 28.1
FAN21G3373 Fragaria x ananassa HOM05D002052 ORTHO05D000222 3.8e-14 84.0 320 28.1
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-14 84.0 294 23.1
FAN21G0018 Fragaria x ananassa HOM05D002052 ORTHO05D000222 5.0e-14 83.6 320 27.8
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 5.0e-14 83.6 227 26.4
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 8.5e-14 82.8 156 28.2
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.5e-14 82.8 332 23.8
MD09G1277700 Malus domestica HOM05D008485 ORTHO05D009647 1.1e-13 82.4 77 48.1
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 1.9e-13 81.6 212 29.7
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 4.2e-13 80.5 211 28.4
FAN21G3049 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.2e-13 80.5 340 27.1
HanXRQChr05g0142331 Helianthus annuus HOM05D014621 ORTHO05D015019 4.2e-13 80.5 249 25.7
Atru.chr9.7 Acer truncatum HOM05D008705 ORTHO05D000669 5.5e-13 80.1 188 29.3
CANSAT01G1847 Cannabis sativa HOM05D014621 ORTHO05D015019 7.2e-13 79.7 312 22.8
RcHm_v2.0_Chr5g0072491 Rosa chinensis HOM05D008485 ORTHO05D009647 7.2e-13 79.7 135 37.0
FAN17G2189 Fragaria x ananassa HOM05D002052 ORTHO05D000222 1.2e-12 79.0 320 27.5
MD04G1142700 Malus domestica HOM05D000514 ORTHO05D000222 1.2e-12 79.0 156 27.6
RcHm_v2.0_Chr1g0378881 Rosa chinensis HOM05D008485 ORTHO05D009647 4.7e-12 77.0 47 76.6
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.0e-12 76.3 384 23.7
Lj6A369T4 Lonicera japonica HOM05D008985 ORTHO05D000222 1.8e-11 75.1 315 22.2
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.3e-11 74.7 390 22.6
Dinv11320 Davidia involucrata HOM05D000791 ORTHO05D000669 4.0e-11 73.9 333 23.4
FAN21G0826 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.0e-11 73.9 126 29.4
Lj8A600T21 Lonicera japonica HOM05D008985 ORTHO05D000222 4.0e-11 73.9 223 23.3
MBI13_g12520_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.2e-11 73.6 294 22.1
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 8.8e-11 72.8 400 22.0
Lsat_1_v5_gn_7_48900 Lactuca sativa HOM05D014621 ORTHO05D015019 1.5e-10 72.0 206 26.7
MBI15_g13723_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-10 72.0 299 24.1
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-10 72.0 332 23.8
MD15G1306500 Malus domestica HOM05D000514 ORTHO05D000222 4.4e-10 70.5 141 27.7
CSS0042483 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.5e-10 69.7 410 21.5
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 7.5e-10 69.7 204 26.5
MBI05_g43492_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.8e-10 69.3 309 23.3
MBI09_g30141_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.8e-10 69.3 214 24.8
MBI19_g26810_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.8e-10 69.3 146 27.4
MELO3C028799.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.7e-09 68.6 211 27.5
MD16G1275200 Malus domestica HOM05D000514 ORTHO05D000222 2.2e-09 68.2 384 21.6
Dinv09859 Davidia involucrata HOM05D000791 ORTHO05D000669 2.8e-09 67.8 174 27.0
MBI19_g18851_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.8e-09 67.8 231 23.4
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 6.3e-09 66.6 243 25.9
MD03G1170400 Malus domestica HOM05D000514 ORTHO05D000222 1.1e-08 65.9 271 23.2
MBI18_g17722_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-08 65.5 170 29.4
MBI12_g38023_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.8e-08 65.1 164 26.8
MBI05_g47419_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.1e-08 64.3 99 31.3
Oeu006554.1 Olea europaea HOM05D017951 ORTHO05D020916 3.1e-08 64.3 209 30.6
vmacro23182 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 3.1e-08 64.3 395 23.5
MBI03_g12026_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.0e-08 63.2 142 26.1
Dinv18594 Davidia involucrata HOM05D000791 ORTHO05D000669 1.2e-07 62.4 201 23.9
FAN07G0023 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.2e-07 62.4 43 67.4
MBI11_g23002_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-07 62.0 332 22.6
MBI18_g19501_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-07 62.0 190 25.3
Dinv00424 Davidia involucrata HOM05D010418 ORTHO05D000669 2.0e-07 61.6 125 31.2
MBI07_g03727_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.7e-07 61.2 104 28.8
MBI09_g42043_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.5e-07 60.8 82 32.9
FAN17G2303 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.5e-07 60.5 317 25.2
Lsat_1_v5_gn_9_92641 Lactuca sativa HOM05D000708 ORTHO05D010402 4.5e-07 60.5 293 21.8
vmacro17806 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 4.5e-07 60.5 388 23.2
CSS0009810 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.7e-07 59.7 249 24.9
MBI18_g07911_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.7e-07 59.7 180 23.9
Prupe.6G193600 Prunus persica HOM05D000539 ORTHO05D000233 1.0e-06 59.3 226 27.0
RcHm_v2.0_Chr6g0272461 Rosa chinensis HOM05D008705 ORTHO05D000669 1.0e-06 59.3 128 26.6
Dinv03037 Davidia involucrata HOM05D010418 ORTHO05D000669 1.7e-06 58.5 125 30.4
SGA_v2.0_scaffold752G53551 Striga asiatica HOM05D025956 ORTHO05D000669 1.7e-06 58.5 196 25.0
ClCG04G001600 Citrullus lanatus HOM05D001963 ORTHO05D001863 2.3e-06 58.2 138 24.6
Dinv03964 Davidia involucrata HOM05D010418 ORTHO05D000669 2.9e-06 57.8 124 30.6
Dinv18123 Davidia involucrata HOM05D010418 ORTHO05D000669 2.9e-06 57.8 110 30.9
RcHm_v2.0_Chr7g0207401 Rosa chinensis HOM05D008485 ORTHO05D009647 2.9e-06 57.8 112 35.7
MBI03_g21547_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-06 57.4 204 24.0
MBI09_g10054_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-06 57.4 129 25.6


User provided reference genes

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