Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 7.4e-107 390.6 200 100.0
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.4e-105 385.6 200 98.5
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.2e-103 379.0 200 96.5
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.2e-103 379.0 200 96.5
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 1.1e-102 376.7 200 96.0
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.3e-98 363.2 221 87.8
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 5.3e-97 357.8 204 90.7
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 5.3e-89 331.3 204 82.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 5.5e-86 321.2 200 82.0
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 7.2e-86 320.9 204 80.9
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 3.6e-85 318.5 204 80.4
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 1.0e-84 317.0 204 80.4
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 6.7e-84 314.3 204 79.4
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 6.7e-84 314.3 204 79.4
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.5e-83 313.2 204 78.9
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.9e-83 312.8 205 80.5
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 4.3e-83 311.6 205 78.5
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 1.3e-82 310.1 199 80.9
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 2.2e-82 309.3 200 77.5
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.8e-82 308.9 200 79.0
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 2.8e-82 308.9 199 78.9
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 2.8e-82 308.9 200 78.5
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 4.8e-82 308.1 201 77.6
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 4.8e-82 308.1 201 78.6
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 8.2e-82 307.4 200 79.0
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.1e-81 307.0 198 79.3
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 1.8e-81 306.2 205 77.6
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 5.3e-81 304.7 200 76.5
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 9.1e-81 303.9 206 76.2
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.2e-80 303.5 205 77.1
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.2e-80 303.5 206 76.7
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 1.2e-80 303.5 205 77.6
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.5e-80 303.1 188 80.3
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.5e-80 303.1 200 77.5
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 3.4e-80 302.0 206 75.7
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 3.4e-80 302.0 205 76.6
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 5.9e-80 301.2 204 76.0
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 5.9e-80 301.2 205 76.6
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 5.9e-80 301.2 205 75.6
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.0e-79 300.4 206 76.2
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.0e-79 300.4 190 80.5
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 1.7e-79 299.7 204 77.0
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 2.2e-79 299.3 204 77.0
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 2.2e-79 299.3 199 76.9
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 2.9e-79 298.9 205 76.1
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 3.8e-79 298.5 196 76.5
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 3.8e-79 298.5 191 80.6
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 8.5e-79 297.4 204 76.0
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.1e-78 297.0 199 76.4
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.1e-78 297.0 199 76.4
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.4e-78 296.6 203 75.9
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.9e-78 296.2 182 80.8
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 2.5e-78 295.8 193 78.8
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 5.5e-78 294.7 205 74.1
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 7.2e-78 294.3 205 74.1
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 7.2e-78 294.3 182 81.3
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.2e-77 293.5 201 74.6
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 2.1e-77 292.7 202 74.3
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 2.1e-77 292.7 205 76.6
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 3.6e-77 292.0 205 73.7
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 4.6e-77 291.6 201 74.1
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 4.6e-77 291.6 202 74.3
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 6.1e-77 291.2 199 74.9
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 1.4e-76 290.0 203 72.9
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 1.8e-76 289.7 202 73.3
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 1.8e-76 289.7 202 73.3
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 1.8e-76 289.7 202 73.3
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.8e-76 289.7 200 74.0
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 3.9e-76 288.5 204 74.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 8.8e-76 287.3 202 72.3
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 1.1e-75 287.0 220 70.5
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.5e-75 286.6 206 72.8
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.0e-75 286.2 202 72.8
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 2.0e-75 286.2 202 73.3
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 3.3e-75 285.4 202 71.8
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 4.4e-75 285.0 201 73.1
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 4.4e-75 285.0 203 71.9
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 9.7e-75 283.9 203 71.9
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 2.2e-74 282.7 188 76.6
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 2.8e-74 282.3 200 73.5
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 2.8e-74 282.3 199 73.9
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 2.8e-74 282.3 193 74.1
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 2.8e-74 282.3 206 73.8
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.8e-74 281.6 193 74.1
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.4e-73 280.0 205 72.7
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 1.4e-73 280.0 195 73.3
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.1e-73 278.5 195 72.3
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 2.6e-72 275.8 205 69.3
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 5.9e-72 274.6 167 82.6
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 5.0e-71 271.6 223 68.2
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 6.5e-71 271.2 229 64.6
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.4e-70 270.0 186 73.7
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 6.1e-69 264.6 187 72.7
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 1.1e-67 260.4 188 71.3
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.3e-67 258.8 204 68.6
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 3.7e-66 255.4 242 58.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 3.7e-66 255.4 315 49.8
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 2.2e-63 246.1 203 65.0
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 3.8e-63 245.4 161 79.5
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 8.5e-63 244.2 164 75.0
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 1.4e-57 226.9 153 75.8
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.3e-50 203.8 132 76.5
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 3.7e-50 202.2 116 87.1
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 5.4e-49 198.4 120 84.2
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-47 194.1 134 72.4
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 6.5e-47 191.4 152 64.5
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.5e-46 190.3 120 76.7
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.5e-46 190.3 134 74.6
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 9.5e-46 187.6 133 72.2
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 8.0e-45 184.5 106 84.9
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 6.3e-42 174.9 108 79.6
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 8.0e-37 157.9 147 58.5
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 7.8e-32 141.4 192 46.4
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 3.3e-30 136.0 175 44.0
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.1e-28 131.0 185 42.7
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 2.3e-28 129.8 92 69.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 2.9e-26 122.9 138 47.8
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 2.0e-24 116.7 134 50.0
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 3.5e-24 115.9 207 38.6
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 8.1e-21 104.8 209 39.7
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 4.4e-19 99.0 225 33.8
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 4.9e-10 68.9 99 37.4
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-08 64.3 48 68.8
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 2.1e-08 63.5 38 78.9
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 2.7e-08 63.2 55 63.6
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 1.0e-07 61.2 142 30.3
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.5e-06 56.6 33 81.8


User provided reference genes

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