Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3190 Fragaria x ananassa HOM05D002007 ORTHO05D005759 7.4e-86 320.5 159 100.0
FAN18G3178 Fragaria x ananassa HOM05D002007 ORTHO05D005759 7.4e-86 320.5 159 100.0
FAN13G3232 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.8e-85 318.5 159 99.4
FvH4_5g24680 Fragaria vesca HOM05D002007 ORTHO05D005759 4.1e-84 314.7 159 98.1
FAN08G1950 Fragaria x ananassa HOM05D002007 ORTHO05D005759 4.7e-80 301.2 159 93.7
FAN04G2167 Fragaria x ananassa HOM05D002007 ORTHO05D005759 8.0e-80 300.4 157 94.3
RcHm_v2.0_Chr7g0215061 Rosa chinensis HOM05D002007 ORTHO05D005759 6.5e-74 280.8 159 87.4
Prupe.5G014700 Prunus persica HOM05D002007 ORTHO05D005759 3.1e-68 261.9 159 78.6
MD06G1012000 Malus domestica HOM05D002007 ORTHO05D005759 2.3e-63 245.7 159 74.8
CANSAT35G0197 Cannabis sativa HOM05D002007 ORTHO05D005759 8.0e-56 220.7 159 67.9
Haze_08040 Corylus avellana HOM05D002007 ORTHO05D005759 2.3e-55 219.2 159 66.7
Haze_08050 Corylus avellana HOM05D002007 ORTHO05D005759 2.3e-55 219.2 159 66.7
QL12p003360 Quercus lobata HOM05D002007 ORTHO05D005759 4.4e-54 214.9 158 63.9
Cpa.g.sc579.3 Carica papaya HOM05D002007 ORTHO05D005759 5.4e-52 208.0 160 66.2
TWI32G1199 Tripterygium wilfordii HOM05D002007 ORTHO05D005759 7.0e-52 207.6 159 62.3
ClCG07G011150 Citrullus lanatus HOM05D002007 ORTHO05D005759 9.2e-52 207.2 159 64.2
CiPaw.05G148700 Carya illinoinensis HOM05D002007 ORTHO05D005759 4.6e-51 204.9 160 63.8
Sed0024497 Sechium edule HOM05D002007 ORTHO05D005759 4.6e-51 204.9 159 61.0
Nn3g19126 Nelumbo nucifera HOM05D002007 ORTHO05D005759 3.9e-50 201.8 160 61.2
TAR629G0178 Trochodendron aralioides HOM05D002007 ORTHO05D005759 3.9e-50 201.8 159 61.6
Thecc.03G321300 Theobroma cacao HOM05D002007 ORTHO05D005759 1.1e-49 200.3 159 61.6
QL12p003363 Quercus lobata HOM05D002007 ORTHO05D005759 1.5e-49 199.9 158 60.8
Atru.chr6.2147 Acer truncatum HOM05D002007 ORTHO05D005759 1.9e-49 199.5 159 61.6
CiPaw.06G072700 Carya illinoinensis HOM05D002007 ORTHO05D005759 1.9e-49 199.5 160 63.8
VMungo1215G3059 Vigna mungo HOM05D002007 ORTHO05D005759 3.3e-49 198.7 160 60.6
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 4.3e-49 198.4 159 61.6
Phvul.002G122900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 4.3e-49 198.4 160 61.2
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 5.6e-49 198.0 159 59.1
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 5.6e-49 198.0 159 59.1
Glyma.01G152600 Glycine max HOM05D002007 ORTHO05D005759 7.3e-49 197.6 160 61.2
Glyma.09G217800 Glycine max HOM05D002007 ORTHO05D005759 7.3e-49 197.6 160 60.0
Nn1g09291 Nelumbo nucifera HOM05D002007 ORTHO05D005759 6.2e-48 194.5 159 60.4
Sed0024576 Sechium edule HOM05D002007 ORTHO05D005759 6.2e-48 194.5 159 62.3
Ciclev10003495m.g Citrus clementina HOM05D002007 ORTHO05D005759 1.4e-47 193.4 159 59.7
Duzib205G1662 Durio zibethinus HOM05D002007 ORTHO05D005759 1.8e-47 193.0 159 59.7
Gorai.009G305100 Gossypium raimondii HOM05D002007 ORTHO05D005759 2.3e-47 192.6 159 59.1
Gohir.A05G288800 Gossypium hirsutum HOM05D002007 ORTHO05D005759 5.2e-47 191.4 159 58.5
Aqoxy3G01987 Aquilegia oxysepala HOM05D002007 ORTHO05D005759 1.2e-46 190.3 159 57.9
Potri.003G046000 Populus trichocarpa HOM05D002007 ORTHO05D005759 1.2e-46 190.3 160 58.1
PSO782G5315 Papaver somniferum HOM05D002007 ORTHO05D005759 2.6e-46 189.1 159 56.6
Medtr8g072140 Medicago truncatula HOM05D002007 ORTHO05D005759 4.4e-46 188.3 159 58.5
Phvul.003G277900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 7.5e-46 187.6 157 58.6
Ca_22461_v3 Cicer arietinum L. HOM05D002007 ORTHO05D005759 9.8e-46 187.2 159 58.5
Gohir.A08G148400 Gossypium hirsutum HOM05D002007 ORTHO05D005759 9.8e-46 187.2 159 57.2
Gorai.004G176700 Gossypium raimondii HOM05D002007 ORTHO05D005759 9.8e-46 187.2 159 57.9
TPR.G11463 Trifolium pratense HOM05D002007 ORTHO05D005759 9.8e-46 187.2 159 58.5
Lj2g0009290 Lotus japonicus HOM05D002007 ORTHO05D005759 1.3e-45 186.8 160 59.4
Manes.07G043400 Manihot esculenta HOM05D002007 ORTHO05D005759 1.3e-45 186.8 159 56.6
THA.LOC104811158 Tarenaya hassleriana HOM05D002007 ORTHO05D005759 1.3e-45 186.8 158 58.2
Oeu014069.1 Olea europaea HOM05D002007 ORTHO05D005759 2.2e-45 186.0 159 57.9
Glyma.16G108200 Glycine max HOM05D002007 ORTHO05D005759 3.7e-45 185.3 157 58.0
arahy.Tifrunner.gnm1.ann1.R12JL5 Arachis hypogaea HOM05D002007 ORTHO05D005759 8.3e-45 184.1 160 55.6
arahy.Tifrunner.gnm1.ann1.TCKY6I Arachis hypogaea HOM05D002007 ORTHO05D005759 8.3e-45 184.1 160 55.6
COL.COLO4_16737 Corchorus olitorius HOM05D002007 ORTHO05D005759 1.1e-44 183.7 159 56.6
VMungo0251G0075 Vigna mungo HOM05D002007 ORTHO05D005759 1.9e-44 183.0 157 56.7
Gohir.D08G169500 Gossypium hirsutum HOM05D002007 ORTHO05D005759 5.4e-44 181.4 159 56.6
Sc07g0008110 Simmondsia chinensis HOM05D002007 ORTHO05D005759 5.4e-44 181.4 159 55.3
Dinv09412 Davidia involucrata HOM05D002007 ORTHO05D005759 9.2e-44 180.6 156 59.6
Manes.10G095600 Manihot esculenta HOM05D002007 ORTHO05D005759 1.2e-43 180.3 159 53.5
Sabra03G0020400 Salix brachista HOM05D002007 ORTHO05D005759 1.2e-43 180.3 160 57.5
Psat4g108400 Pisum sativum HOM05D002007 ORTHO05D005759 1.6e-43 179.9 159 59.1
PGR042G3326 Punica granatum HOM05D002007 ORTHO05D005759 1.6e-43 179.9 160 57.5
Potri.004G234500 Populus trichocarpa HOM05D002007 ORTHO05D005759 2.7e-43 179.1 160 56.2
Duzib068G0709 Durio zibethinus HOM05D002007 ORTHO05D005759 1.0e-42 177.2 159 52.8
Psat0s1099g0040 Pisum sativum HOM05D002007 ORTHO05D005759 1.0e-42 177.2 159 56.0
Sabra01G0179300 Salix brachista HOM05D002007 ORTHO05D005759 1.3e-42 176.8 160 55.0
Eucgr.E01156 Eucalyptus grandis HOM05D002007 ORTHO05D005759 3.0e-42 175.6 160 54.4
RhsimUnG0122600 Rhododendron simsii HOM05D002007 ORTHO05D005759 6.6e-42 174.5 159 54.7
CsaV3_4G014820 Cucumis sativus L. HOM05D002007 ORTHO05D000355 8.6e-42 174.1 160 55.0
Oeu057154.1 Olea europaea HOM05D002007 ORTHO05D005759 8.6e-42 174.1 157 55.4
Solyc08g075230.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 1.1e-41 173.7 159 52.8
PGSC0003DMG400001950 Solanum tuberosum HOM05D002007 ORTHO05D005759 1.9e-41 172.9 159 52.2
CAN.G514.11 Capsicum annuum HOM05D002007 ORTHO05D005759 2.5e-41 172.6 159 54.1
Migut.A00477 Erythranthe guttata HOM05D002007 ORTHO05D005759 2.5e-41 172.6 159 55.3
Lalb_Chr05g0229301 Lupinus albus HOM05D002007 ORTHO05D005759 2.5e-41 172.6 159 54.7
Medtr5g025760 Medicago truncatula HOM05D002007 ORTHO05D005759 2.5e-41 172.6 159 53.5
Rhsim11G0038300 Rhododendron simsii HOM05D002007 ORTHO05D005759 2.5e-41 172.6 159 54.1
Peaxi162Scf01644g00002 Petunia axillaris HOM05D002007 ORTHO05D005759 5.6e-41 171.4 159 51.6
TPR.G7868 Trifolium pratense HOM05D002007 ORTHO05D005759 5.6e-41 171.4 159 53.5
Nitab4.5_0000236g0050 Nicotiana tabacum HOM05D002007 ORTHO05D005759 9.5e-41 170.6 159 52.8
Sopen08g023830 Solanum pennellii HOM05D002007 ORTHO05D005759 9.5e-41 170.6 159 52.2
Sabra03G0020600 Salix brachista HOM05D002007 ORTHO05D005759 1.2e-40 170.2 157 56.1
ClCG11G016180 Citrullus lanatus HOM05D002007 ORTHO05D005759 1.6e-40 169.9 160 53.8
vmacro00104 Vaccinium macrocarpon HOM05D002007 ORTHO05D005759 1.6e-40 169.9 158 54.4
Nitab4.5_0005896g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 2.1e-40 169.5 159 52.2
Gohir.D12G203700 Gossypium hirsutum HOM05D002007 ORTHO05D005759 3.6e-40 168.7 160 52.5
Gorai.008G218500 Gossypium raimondii HOM05D002007 ORTHO05D005759 3.6e-40 168.7 160 52.5
Gohir.A12G200900 Gossypium hirsutum HOM05D002007 ORTHO05D005759 4.7e-40 168.3 160 52.5
Lalb_Chr09g0325081 Lupinus albus HOM05D002007 ORTHO05D005759 6.2e-40 167.9 160 53.1
Sp2g10270 Schrenkiella parvula HOM05D002007 ORTHO05D005759 6.2e-40 167.9 158 53.8
Oeu011637.1 Olea europaea HOM05D002007 ORTHO05D005759 1.4e-39 166.8 159 52.2
Lalb_Chr05g0215211 Lupinus albus HOM05D002007 ORTHO05D005759 1.8e-39 166.4 159 54.1
Actinidia32796 Actinidia chinensis HOM05D002007 ORTHO05D005759 2.3e-39 166.0 141 56.7
ATR0568G058 Amborella trichopoda HOM05D002007 ORTHO05D005759 6.8e-39 164.5 161 52.8
EL10Ac5g11944 Beta vulgaris HOM05D002007 ORTHO05D005759 2.0e-38 162.9 159 54.1
Thhalv10001032m.g Eutrema salsugineum HOM05D002007 ORTHO05D005759 2.6e-38 162.5 158 50.6
Aa31LG9G7700 Aethionema arabicum HOM05D002007 ORTHO05D005759 4.4e-38 161.8 157 49.7
AT5G45320 Arabidopsis thaliana HOM05D002007 ORTHO05D005759 1.3e-37 160.2 158 51.9
Peaxi162Scf00876g00032 Petunia axillaris HOM05D002007 ORTHO05D005759 1.3e-37 160.2 159 48.4
BcaB07g30461 Brassica carinata HOM05D002007 ORTHO05D005759 3.7e-37 158.7 159 51.6
BcaC06g31560 Brassica carinata HOM05D002007 ORTHO05D005759 3.7e-37 158.7 158 51.9
Migut.E01381 Erythranthe guttata HOM05D002007 ORTHO05D005759 6.4e-37 157.9 159 52.8
Sed0013162 Sechium edule HOM05D002007 ORTHO05D005759 8.3e-37 157.5 160 50.0
HPP92_022732 Vanilla planifolia HOM05D002007 ORTHO05D005759 8.3e-37 157.5 160 49.4
CARHR176770 Cardamine hirsuta HOM05D002007 ORTHO05D005759 1.1e-36 157.1 158 50.6
Nitab4.5_0010692g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.1e-36 157.1 160 49.4
HPP92_022745 Vanilla planifolia HOM05D002007 ORTHO05D005759 1.1e-36 157.1 149 50.3
SHI32759 Sapria himalayana HOM05D002007 ORTHO05D005759 1.4e-36 156.8 144 52.8
CsaV3_4G007100 Cucumis sativus L. HOM05D002007 ORTHO05D005759 2.4e-36 156.0 129 59.7
AL8G13480 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 3.2e-36 155.6 158 51.3
AL8G13540 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 3.2e-36 155.6 158 51.3
DCAR_004537 Daucus carota HOM05D002007 ORTHO05D005759 5.4e-36 154.8 160 48.1
Oeu023064.1 Olea europaea HOM05D002007 ORTHO05D005759 1.2e-35 153.7 159 49.1
BcaC03g16740 Brassica carinata HOM05D002007 ORTHO05D005759 2.1e-35 152.9 159 49.7
A02p29030 Brassica napus HOM05D002007 ORTHO05D005759 2.1e-35 152.9 159 49.7
C02p46130 Brassica napus HOM05D002007 ORTHO05D005759 2.1e-35 152.9 159 49.7
BraA02t07935Z Brassica rapa HOM05D002007 ORTHO05D005759 2.1e-35 152.9 159 49.7
BolC2t10670H Brassica oleracea HOM05D002007 ORTHO05D005759 4.6e-35 151.8 159 49.1
BcaC06g34446 Brassica carinata HOM05D002007 ORTHO05D005759 1.0e-34 150.6 158 51.3
MBI04_g30804_MAGBIO Magnolia biondii HOM05D002007 ORTHO05D005759 1.3e-34 150.2 151 49.0
Nitab4.5_0000943g0020 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.7e-34 149.8 160 47.5
Carub.0008s0281 Capsella rubella HOM05D002007 ORTHO05D005759 3.0e-34 149.1 158 50.0
PGSC0003DMG400029286 Solanum tuberosum HOM05D002007 ORTHO05D005759 3.0e-34 149.1 159 45.3
Cc08_g06070 Coffea canephora HOM05D002007 ORTHO05D005759 3.9e-34 148.7 160 49.4
Actinidia01243 Actinidia chinensis HOM05D002007 ORTHO05D005759 8.6e-34 147.5 132 55.3
Solyc12g096180.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 1.1e-33 147.1 157 45.2
DCAR_030946 Daucus carota HOM05D002007 ORTHO05D005759 4.3e-33 145.2 162 47.5
CAN.G947.27 Capsicum annuum HOM05D002007 ORTHO05D005759 9.5e-33 144.1 159 45.9
SalBow4G0822 Salvia bowleyana HOM05D002007 ORTHO05D000355 9.5e-33 144.1 158 46.2
Lsat_1_v5_gn_6_74040 Lactuca sativa HOM05D002007 ORTHO05D005759 1.2e-32 143.7 155 45.8
MSTRG.25753 Avicennia marina HOM05D002007 ORTHO05D005759 8.1e-32 141.0 123 55.3
ECA240G4318 Erigeron canadensis HOM05D002007 ORTHO05D000355 3.1e-31 139.0 158 44.3
A06p46680 Brassica napus HOM05D002007 ORTHO05D005759 5.2e-31 138.3 139 53.2
BraA06t27540Z Brassica rapa HOM05D002007 ORTHO05D005759 5.2e-31 138.3 139 53.2
DCAR_000713 Daucus carota HOM05D002007 ORTHO05D005759 5.2e-31 138.3 160 45.0
C07p28350 Brassica napus HOM05D002007 ORTHO05D005759 1.2e-30 137.1 139 52.5
BolC7t43375H Brassica oleracea HOM05D002007 ORTHO05D005759 1.2e-30 137.1 139 52.5
HanXRQChr13g0412731 Helianthus annuus HOM05D002007 ORTHO05D005759 1.2e-30 137.1 158 44.9
Lsat_1_v5_gn_6_16960 Lactuca sativa HOM05D002007 ORTHO05D005759 1.2e-30 137.1 148 48.6
HanXRQChr08g0227001 Helianthus annuus HOM05D002007 ORTHO05D005759 5.8e-30 134.8 159 45.9
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 3.7e-29 132.1 136 47.1
ECA233G2534 Erigeron canadensis HOM05D002007 ORTHO05D005759 8.4e-29 131.0 158 43.7
HanXRQChr03g0082821 Helianthus annuus HOM05D002007 ORTHO05D005759 2.7e-27 125.9 156 42.3
MD16G1286800 Malus domestica HOM05D002007 ORTHO05D005759 2.7e-27 125.9 88 71.6
HPP92_027661 Vanilla planifolia HOM05D002007 ORTHO05D005759 1.1e-25 120.6 159 39.0
unitig_0.g2832 Utricularia gibba HOM05D002007 ORTHO05D005759 5.6e-25 118.2 159 38.4
CDE02G4391 Ceratophyllum demersum HOM05D002007 ORTHO05D005759 8.1e-24 114.4 125 41.6
Os08g0163600 Oryza sativa ssp. japonica HOM05D009720 ORTHO05D005759 1.1e-23 114.0 158 37.3
Os06g0710500 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D005759 6.4e-21 104.8 162 36.4
MELO3C016214.2 Cucumis melo HOM05D002007 ORTHO05D005759 2.1e-19 99.8 79 59.5
C02p18330 Brassica napus HOM05D002007 ORTHO05D005759 1.5e-17 93.6 105 45.7
Gohir.D05G290066 Gossypium hirsutum HOM05D002007 ORTHO05D005759 2.8e-16 89.4 73 56.2
Carub.0001s3312 Capsella rubella HOM05D002007 ORTHO05D005759 4.8e-16 88.6 154 29.2
Zm00001eb415280 Zea mays HOM05D009720 ORTHO05D012012 6.2e-16 88.2 159 30.8
SEGI_25929 Sequoiadendron giganteum HOM05D002540 ORTHO05D002672 3.4e-14 82.4 160 25.6
HPP92_007452 Vanilla planifolia HOM05D002007 ORTHO05D005759 1.7e-13 80.1 126 34.9
TAR624G0635 Trochodendron aralioides HOM05D002007 ORTHO05D005759 7.1e-12 74.7 66 54.5
Zm00001eb081960 Zea mays HOM05D009720 ORTHO05D012012 7.1e-12 74.7 133 30.8
Carub.0005s0427 Capsella rubella HOM05D002540 ORTHO05D002672 1.2e-11 73.9 157 28.0
BcaC03g14419 Brassica carinata HOM05D002007 ORTHO05D005759 5.1e-10 68.6 79 41.8
CSS0045039 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 2.5e-09 66.2 158 29.1
CARHR013380 Cardamine hirsuta HOM05D002540 ORTHO05D002672 4.3e-09 65.5 153 27.5
Aa31LG2G6160 Aethionema arabicum HOM05D002540 ORTHO05D002672 7.3e-09 64.7 157 24.8
AL5G15120 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 7.3e-09 64.7 157 24.8
BolC2t07971H Brassica oleracea HOM05D002007 ORTHO05D005759 7.3e-09 64.7 59 52.5
AUR62005507 Chenopodium quinoa HOM05D002540 ORTHO05D002672 7.3e-09 64.7 157 26.1
Duzib248G0304 Durio zibethinus HOM05D002540 ORTHO05D002672 7.3e-09 64.7 157 26.1
EL10Ac2g04746 Beta vulgaris HOM05D002540 ORTHO05D002672 3.6e-08 62.4 157 25.5
Cc11_g15650 Coffea canephora HOM05D002540 ORTHO05D002672 3.6e-08 62.4 157 25.5
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 4.8e-08 62.0 51 54.9
AT3G26350 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 6.2e-08 61.6 157 24.8
CARHR147360 Cardamine hirsuta HOM05D002540 ORTHO05D002672 8.1e-08 61.2 157 25.5
Hma1.2p1_0815F.1_g222730 Hydrangea macrophylla HOM05D002540 ORTHO05D002672 2.4e-07 59.7 157 23.6
SGA_v2.0_scaffold42G15944 Striga asiatica HOM05D002540 ORTHO05D002672 2.4e-07 59.7 157 26.8
Nn3g16668 Nelumbo nucifera HOM05D002540 ORTHO05D002672 3.1e-07 59.3 157 24.2
Migut.K00623 Erythranthe guttata HOM05D002540 ORTHO05D002672 4.0e-07 58.9 139 25.9
unitig_26.g10374 Utricularia gibba HOM05D002540 ORTHO05D002672 4.0e-07 58.9 128 26.6
Mapoly0067s0044 Marchantia polymorpha HOM05D000973 ORTHO05D000652 5.8e-06 55.1 160 27.5


User provided reference genes

Program Settings