Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.8e-111 404.8 204 100.0
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.2e-105 385.2 204 94.6
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 9.5e-102 373.6 200 94.5
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.3e-100 369.0 200 93.5
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.5e-94 349.7 200 87.5
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.3e-84 315.8 222 76.6
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 3.0e-71 272.3 200 68.5
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 3.6e-69 265.4 201 68.2
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.9e-65 253.1 201 62.7
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.9e-65 253.1 203 61.6
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 4.2e-65 251.9 201 62.7
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 2.1e-64 249.6 200 63.0
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 4.6e-64 248.4 201 60.2
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 8.1e-61 237.7 202 58.4
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.8e-60 236.5 201 58.7
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 5.3e-60 235.0 203 59.6
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.5e-59 233.4 202 56.9
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 7.6e-59 231.1 179 63.7
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-58 230.3 202 57.9
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 2.2e-58 229.6 202 57.4
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 2.9e-58 229.2 202 58.9
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 4.9e-58 228.4 202 58.9
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 6.4e-58 228.0 202 57.4
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 8.4e-58 227.6 200 58.5
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.4e-57 226.1 202 58.4
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.4e-57 226.1 200 57.5
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.2e-56 223.8 200 57.0
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.1e-56 223.0 180 60.0
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 2.7e-56 222.6 195 57.4
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 6.0e-56 221.5 200 55.5
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 1.0e-55 220.7 193 57.0
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.3e-55 220.3 194 57.7
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 1.8e-55 219.9 193 57.0
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.8e-55 219.9 182 59.3
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 3.0e-55 219.2 202 57.9
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 5.1e-55 218.4 200 55.5
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 6.7e-55 218.0 202 54.5
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 6.7e-55 218.0 164 64.0
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 8.7e-55 217.6 191 58.6
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.1e-54 217.2 199 56.3
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.5e-54 216.1 193 54.9
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 3.3e-54 215.7 204 52.9
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.3e-53 213.8 187 53.5
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.3e-53 213.8 202 57.4
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.1e-53 213.0 200 55.0
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 2.1e-53 213.0 195 55.4
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 2.8e-53 212.6 189 57.1
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 2.8e-53 212.6 195 54.4
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 3.7e-53 212.2 204 53.9
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 6.2e-53 211.5 199 54.8
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 8.1e-53 211.1 200 54.5
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 1.8e-52 209.9 200 52.0
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.1e-52 209.1 200 54.5
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 3.1e-52 209.1 185 54.1
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 6.9e-52 208.0 203 50.7
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.2e-51 207.2 201 54.2
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 2.0e-51 206.5 194 56.7
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 2.6e-51 206.1 180 56.7
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 4.5e-51 205.3 181 55.2
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.3e-50 203.8 186 55.9
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.3e-50 203.8 186 55.9
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 1.3e-50 203.8 187 54.0
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 1.7e-50 203.4 193 54.4
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 2.2e-50 203.0 175 56.0
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 1.9e-49 199.9 184 57.1
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 4.2e-49 198.7 180 51.1
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.2e-48 197.2 180 49.4
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.2e-48 197.2 201 55.2
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 2.1e-48 196.4 198 49.5
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 2.1e-48 196.4 184 56.0
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.7e-48 196.1 180 48.9
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 4.6e-48 195.3 242 45.5
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 1.0e-47 194.1 202 48.5
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.0e-47 194.1 180 48.9
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 1.8e-47 193.4 180 49.4
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 3.9e-47 192.2 180 48.9
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 3.9e-47 192.2 175 52.6
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 8.7e-47 191.0 189 52.4
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 1.9e-46 189.9 196 47.4
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 3.3e-46 189.1 196 48.0
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.6e-45 186.8 279 41.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.1e-44 182.6 163 52.1
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 6.9e-44 181.4 162 53.1
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 6.9e-44 181.4 191 49.7
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 2.0e-43 179.9 246 43.1
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.6e-43 179.5 162 52.5
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 4.5e-43 178.7 184 51.1
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 2.2e-42 176.4 181 47.5
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 6.5e-42 174.9 202 47.5
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 2.5e-38 162.9 160 50.0
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 2.9e-34 149.4 184 41.8
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 5.0e-34 148.7 156 45.5
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 3.9e-31 139.0 171 42.1
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 9.7e-30 134.4 136 46.3
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.2e-29 133.3 129 57.4
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 3.8e-26 122.5 155 41.9
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 3.8e-26 122.5 305 28.2
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 4.2e-25 119.0 134 45.5
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 6.7e-23 111.7 88 54.5
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.4e-22 109.0 89 60.7
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.4e-20 104.0 86 54.7
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 2.2e-18 96.7 92 50.0
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 2.3e-15 86.7 132 37.9
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.3e-14 82.8 63 58.7
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.7e-14 82.0 59 59.3
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.7e-13 80.5 60 58.3
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.8e-13 79.0 60 56.7
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.8e-13 79.0 60 58.3
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.1e-12 77.8 62 54.8
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.1e-12 77.8 60 56.7
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.2e-11 74.3 71 47.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 5.5e-09 65.5 60 41.7
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 1.2e-06 57.8 61 52.5


User provided reference genes

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