Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.1e-237 824.7 403 100.0
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 4.6e-233 810.8 403 98.0
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.9e-232 807.7 403 97.8
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.6e-232 807.0 403 97.3
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.2e-228 796.2 397 97.0
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.2e-212 743.0 403 89.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 7.6e-212 740.3 403 89.3
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 5.0e-195 684.5 403 82.4
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.4e-189 666.4 403 80.6
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 9.1e-173 610.5 407 72.5
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 2.5e-170 602.4 405 72.3
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 4.7e-169 598.2 411 71.5
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 4.4e-167 591.7 403 70.7
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.3e-166 587.4 401 71.3
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 2.0e-164 582.8 371 74.4
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.0e-163 580.5 413 67.8
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 2.9e-163 578.9 408 70.6
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.5e-163 577.8 413 69.2
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.1e-162 577.0 402 70.1
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.1e-162 577.0 435 66.4
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.9e-162 576.2 426 66.2
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.5e-162 575.9 406 67.7
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 4.2e-162 575.1 366 74.3
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 9.5e-162 573.9 407 69.0
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.1e-161 572.8 403 66.5
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.1e-161 572.8 403 66.5
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.4e-160 570.1 401 68.1
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.2e-159 567.0 394 69.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 3.4e-159 565.5 402 67.2
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 5.7e-159 564.7 396 67.9
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 7.5e-159 564.3 392 68.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.3e-158 563.5 396 67.7
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.2e-158 562.8 404 66.6
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 2.2e-158 562.8 394 69.3
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.2e-158 562.8 403 68.5
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 2.8e-158 562.4 391 66.2
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.1e-157 560.5 392 67.1
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.1e-157 558.5 392 67.9
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 7.0e-157 557.8 398 68.3
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.2e-157 557.4 392 67.9
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.2e-156 557.0 405 64.7
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.5e-156 555.4 392 67.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.5e-156 555.4 367 71.7
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.5e-156 555.1 371 72.2
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 7.7e-156 554.3 371 72.5
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.0e-155 553.9 408 65.4
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.3e-155 553.5 410 66.1
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.5e-154 550.1 403 67.0
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 1.9e-154 549.7 394 67.5
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 1.9e-154 549.7 408 67.4
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 5.6e-154 548.1 395 66.3
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 7.3e-154 547.7 394 67.3
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 7.3e-154 547.7 395 66.6
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.1e-153 546.2 403 63.8
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.1e-153 546.2 379 68.3
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.7e-153 545.0 403 66.3
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 4.7e-153 545.0 391 65.5
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 4.7e-153 545.0 390 66.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.0e-152 543.9 392 66.8
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.3e-152 542.7 387 67.2
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 5.2e-152 541.6 380 68.2
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 5.2e-152 541.6 380 68.2
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.6e-151 539.3 373 68.6
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 5.7e-151 538.1 394 65.5
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 7.5e-151 537.7 379 68.1
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 7.5e-151 537.7 379 68.1
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.3e-150 537.0 392 67.1
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.2e-150 536.2 396 64.6
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 2.9e-150 535.8 380 66.8
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 3.7e-150 535.4 388 65.7
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 4.9e-150 535.0 371 69.8
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 6.4e-150 534.6 391 65.5
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 6.4e-150 534.6 382 67.8
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.4e-149 532.7 404 63.4
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 3.2e-149 532.3 405 63.5
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.2e-149 532.3 379 66.0
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 5.4e-149 531.6 403 64.8
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 9.2e-149 530.8 371 69.0
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.7e-148 529.3 377 66.0
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 5.9e-148 528.1 403 64.5
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 8.6e-147 524.2 369 66.1
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.1e-146 523.9 369 66.7
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 7.3e-146 521.2 405 64.0
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 6.2e-145 518.1 405 62.2
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 4.0e-144 515.4 396 62.6
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 5.2e-144 515.0 403 62.0
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 6.8e-144 514.6 373 66.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 5.8e-143 511.5 444 56.8
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 2.2e-142 509.6 387 65.1
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.9e-142 508.4 383 66.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 8.3e-142 507.7 382 63.4
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 4.1e-141 505.4 378 64.0
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.0e-140 503.1 385 63.1
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.5e-140 502.3 373 62.7
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.9e-139 498.8 386 63.0
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.0e-139 498.4 386 62.7
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.1e-138 497.3 372 64.5
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.9e-138 496.5 389 61.7
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.9e-133 479.9 379 62.3
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 4.1e-133 478.8 387 59.7
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 5.4e-133 478.4 387 59.7
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.2e-132 477.2 396 60.4
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.1e-130 470.7 384 59.9
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.4e-128 463.8 358 63.4
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 3.2e-125 452.6 395 58.7
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.2e-124 450.7 390 57.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 6.6e-123 444.9 288 71.5
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 4.3e-122 442.2 379 57.5
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 4.3e-122 442.2 363 57.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 7.3e-122 441.4 288 70.8
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.3e-118 430.6 396 56.8
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.2e-118 429.9 289 70.2
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 9.3e-117 424.5 379 56.5
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 3.0e-115 419.5 599 41.9
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.3e-110 404.1 374 53.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.8e-110 402.5 377 52.3
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 6.4e-110 401.7 382 52.1
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 5.4e-109 398.7 262 70.6
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 2.7e-108 396.4 256 71.1
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.3e-105 387.5 369 52.8
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 4.0e-104 382.5 266 64.3
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 4.5e-103 379.0 355 56.9
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 9.3e-101 371.3 379 52.8
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.0e-99 366.3 370 48.9
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.1e-98 364.4 250 66.8
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 3.7e-97 359.4 253 63.6
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.7e-97 359.4 241 68.9
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-95 354.0 247 63.6
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-95 354.0 251 62.5
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 3.8e-94 349.4 402 47.0
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.6e-92 344.0 271 62.0
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.6e-92 342.4 263 65.4
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 3.7e-89 332.8 265 61.5
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.1e-84 317.0 193 75.1
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.6e-84 316.2 359 47.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 5.7e-66 255.8 158 73.4
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.7e-65 254.2 295 50.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 5.0e-54 216.1 211 52.6
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 5.5e-53 212.6 232 50.9
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.5e-47 193.0 132 68.9
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 7.5e-42 175.6 115 70.4
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.2e-39 168.3 151 54.3
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 5.6e-37 159.5 405 32.3
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.7e-36 156.4 106 65.1
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 1.4e-35 154.8 156 51.3
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 7.5e-34 149.1 174 49.4
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.3e-33 148.3 372 31.2
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.4e-27 128.3 259 31.7
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 3.2e-24 117.1 99 53.5
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 2.3e-22 110.9 86 57.0
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 7.3e-21 105.9 290 30.0
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.2e-18 98.6 93 51.6
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 7.5e-18 95.9 93 49.5
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 8.3e-17 92.4 93 48.4
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-14 85.1 96 46.9
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-10 71.6 48 56.2
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 4.4e-10 70.1 59 54.2
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 2.4e-08 64.3 52 51.9
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 3.5e-07 60.5 55 49.1


User provided reference genes

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