Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3172 Fragaria x ananassa HOM05D000076 ORTHO05D199059 7.5e-69 263.8 144 100.0
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 8.1e-23 110.9 87 67.8
CSS0033390 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006537 6.6e-17 91.3 103 51.5
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 2.5e-16 89.4 89 59.6
FvH4_4g25921 Fragaria vesca HOM05D000076 ORTHO05D006537 2.5e-16 89.4 92 58.7
FAN17G2736 Fragaria x ananassa HOM05D000076 ORTHO05D006537 2.5e-16 89.4 92 58.7
Prupe.1G247100 Prunus persica HOM05D000076 ORTHO05D006537 2.5e-16 89.4 92 58.7
Rhsim12G0108500 Rhododendron simsii HOM05D000076 ORTHO05D006537 2.5e-16 89.4 89 59.6
RcHm_v2.0_Chr4g0433391 Rosa chinensis HOM05D000076 ORTHO05D006537 2.5e-16 89.4 92 58.7
CiPaw.06G066500 Carya illinoinensis HOM05D000076 ORTHO05D006537 4.3e-16 88.6 89 58.4
Ca_25136_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006537 5.6e-16 88.2 92 57.6
Lj6g0014045 Lotus japonicus HOM05D000076 ORTHO05D006537 5.6e-16 88.2 92 57.6
Psat5g091800 Pisum sativum HOM05D000076 ORTHO05D006537 5.6e-16 88.2 92 57.6
TPR.G15859 Trifolium pratense HOM05D000076 ORTHO05D006537 5.6e-16 88.2 92 57.6
TPR.G30528 Trifolium pratense HOM05D000076 ORTHO05D006537 5.6e-16 88.2 92 57.6
vmacro16178 Vaccinium macrocarpon HOM05D000076 ORTHO05D006537 5.6e-16 88.2 89 58.4
Actinidia15107 Actinidia chinensis HOM05D000076 ORTHO05D006537 7.3e-16 87.8 89 57.3
Actinidia37445 Actinidia chinensis HOM05D000076 ORTHO05D006537 7.3e-16 87.8 89 57.3
Duzib251G0776 Durio zibethinus HOM05D000076 ORTHO05D006537 7.3e-16 87.8 89 58.4
MD13G1098200 Malus domestica HOM05D000076 ORTHO05D006537 7.3e-16 87.8 89 58.4
MD16G1099100 Malus domestica HOM05D000076 ORTHO05D006537 7.3e-16 87.8 89 58.4
Manes.12G021200 Manihot esculenta HOM05D000076 ORTHO05D006537 7.3e-16 87.8 92 57.6
Ciclev10031037m.g Citrus clementina HOM05D000076 ORTHO05D006537 9.6e-16 87.4 92 57.6
GSVIVG01000555001 Vitis vinifera HOM05D000076 ORTHO05D006537 9.6e-16 87.4 89 58.4
Medtr3g086570 Medicago truncatula HOM05D000076 ORTHO05D006537 1.3e-15 87.0 92 56.5
QL03p056977 Quercus lobata HOM05D000076 ORTHO05D006537 1.3e-15 87.0 89 58.4
THA.LOC104825668 Tarenaya hassleriana HOM05D000076 ORTHO05D006537 1.3e-15 87.0 92 55.4
TAR371G0062 Trochodendron aralioides HOM05D000076 ORTHO05D006537 1.3e-15 87.0 89 58.4
VMungo1383G2989 Vigna mungo HOM05D000076 ORTHO05D006537 1.3e-15 87.0 92 57.6
Thecc.02G263200 Theobroma cacao HOM05D000076 ORTHO05D006537 1.6e-15 86.7 89 57.3
TWI18G0661 Tripterygium wilfordii HOM05D000076 ORTHO05D006537 1.6e-15 86.7 89 57.3
Aqoxy3G01255 Aquilegia oxysepala HOM05D000076 ORTHO05D006537 2.1e-15 86.3 92 56.5
Sc11g0000890 Simmondsia chinensis HOM05D000076 ORTHO05D006537 2.1e-15 86.3 89 58.4
CSS0034011 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 56.2
Dinv14738 Davidia involucrata HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 58.4
Dinv15210 Davidia involucrata HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 57.3
Gohir.A12G145400 Gossypium hirsutum HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 57.3
Gohir.D12G149900 Gossypium hirsutum HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 57.3
Gorai.008G161400 Gossypium raimondii HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 57.3
Potri.008G185200 Populus trichocarpa HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 57.3
Potri.010G048500 Populus trichocarpa HOM05D000076 ORTHO05D006537 2.8e-15 85.9 89 57.3
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 2.8e-15 85.9 89 57.3
SGA_v2.0_scaffold87G27061 Striga asiatica HOM05D000076 ORTHO05D006537 2.8e-15 85.9 92 56.5
Atru.chr11.2162 Acer truncatum HOM05D000076 ORTHO05D006537 3.6e-15 85.5 92 56.5
Gohir.D04G180100 Gossypium hirsutum HOM05D000076 ORTHO05D006537 3.6e-15 85.5 89 56.2
Lalb_Chr11g0075541 Lupinus albus HOM05D000076 ORTHO05D006537 3.6e-15 85.5 92 55.4
MBI09_g06385_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D006537 3.6e-15 85.5 89 57.3
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 3.6e-15 85.5 89 56.2
Migut.E00214 Erythranthe guttata HOM05D000076 ORTHO05D006537 4.8e-15 85.1 89 56.2
Hund25398 Selenicereus undatus HOM05D000076 ORTHO05D006537 4.8e-15 85.1 89 57.3
THA.LOC104805278 Tarenaya hassleriana HOM05D000076 ORTHO05D006537 4.8e-15 85.1 92 56.5
TAR629G2896 Trochodendron aralioides HOM05D000076 ORTHO05D006537 4.8e-15 85.1 89 56.2
COL.COLO4_23484 Corchorus olitorius HOM05D000076 ORTHO05D006537 8.1e-15 84.3 89 56.2
Gohir.A04G136900 Gossypium hirsutum HOM05D000076 ORTHO05D006537 8.1e-15 84.3 89 55.1
Gorai.012G173200 Gossypium raimondii HOM05D000076 ORTHO05D006537 8.1e-15 84.3 89 55.1
Phvul.001G255600 Phaseolus vulgaris HOM05D000076 ORTHO05D006537 8.1e-15 84.3 92 55.4
Ah.03g133370 Amaranthus hybridus HOM05D000076 ORTHO05D006537 1.1e-14 84.0 89 57.3
AUR62005502 Chenopodium quinoa HOM05D000076 ORTHO05D006537 1.1e-14 84.0 89 57.3
AUR62024238 Chenopodium quinoa HOM05D000076 ORTHO05D006537 1.1e-14 84.0 89 57.3
Lj6A814G99 Lonicera japonica HOM05D000076 ORTHO05D006537 1.1e-14 84.0 89 56.2
Nn4g22563 Nelumbo nucifera HOM05D000076 ORTHO05D006537 1.1e-14 84.0 89 57.3
Oeu031880.1 Olea europaea HOM05D000076 ORTHO05D006537 1.1e-14 84.0 89 55.1
Oeu057547.1 Olea europaea HOM05D000076 ORTHO05D006537 1.1e-14 84.0 87 57.5
CiPaw.05G179900 Carya illinoinensis HOM05D000076 ORTHO05D006537 1.4e-14 83.6 89 56.2
ClCG05G025870 Citrullus lanatus HOM05D000076 ORTHO05D006537 1.4e-14 83.6 89 55.1
Glyma.11G243700 Glycine max HOM05D000076 ORTHO05D006537 1.4e-14 83.6 89 55.1
Glyma.18G013400 Glycine max HOM05D000076 ORTHO05D006537 1.4e-14 83.6 89 55.1
PSO017G3552 Papaver somniferum HOM05D000076 ORTHO05D006537 1.4e-14 83.6 89 57.3
PSO339G4815 Papaver somniferum HOM05D000076 ORTHO05D006537 1.4e-14 83.6 89 57.3
SGA_v2.0_scaffold63G21740 Striga asiatica HOM05D000076 ORTHO05D006537 1.4e-14 83.6 92 55.4
BcaC04g23933 Brassica carinata HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 55.4
A09p03030 Brassica napus HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 55.4
A09p03060 Brassica napus HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 55.4
C09p03220 Brassica napus HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 55.4
BolC9t53247H Brassica oleracea HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 55.4
BraA09t35945Z Brassica rapa HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 55.4
Cpa.g.sc33.45 Carica papaya HOM05D000076 ORTHO05D006537 1.8e-14 83.2 92 56.5
MELO3C011938.2 Cucumis melo HOM05D000076 ORTHO05D006537 1.8e-14 83.2 89 55.1
Eucgr.H02475 Eucalyptus grandis HOM05D000076 ORTHO05D006537 1.8e-14 83.2 89 56.2
Sed0027991 Sechium edule HOM05D000076 ORTHO05D006537 1.8e-14 83.2 89 55.1
EL10Ac6g13874 Beta vulgaris HOM05D000076 ORTHO05D006537 2.4e-14 82.8 74 63.5
CsaV3_5G030990 Cucumis sativus L. HOM05D000076 ORTHO05D006537 2.4e-14 82.8 89 55.1
SHI17813 Sapria himalayana HOM05D000076 ORTHO05D006537 2.4e-14 82.8 89 55.1
TWI75G1343 Tripterygium wilfordii HOM05D000076 ORTHO05D006537 2.4e-14 82.8 89 55.1
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 3.1e-14 82.4 92 55.4
AL5G15140 Arabidopsis lyrata HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
AT3G26370 Arabidopsis thaliana HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
A06p42050 Brassica napus HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
C07p35430 Brassica napus HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
BolC7t44067H Brassica oleracea HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
BraA06t27122Z Brassica rapa HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
Carub.0005s0429 Capsella rubella HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
CARHR147380 Cardamine hirsuta HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
Thhalv10003920m.g Eutrema salsugineum HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
PSO478G1179 Papaver somniferum HOM05D000076 ORTHO05D006537 3.1e-14 82.4 89 56.2
PSO478G4993 Papaver somniferum HOM05D000076 ORTHO05D006537 3.1e-14 82.4 89 56.2
PGR119G0671 Punica granatum HOM05D000076 ORTHO05D006537 3.1e-14 82.4 89 55.1
Sp2g15520 Schrenkiella parvula HOM05D000076 ORTHO05D006537 3.1e-14 82.4 92 55.4
HanXRQChr11g0329181 Helianthus annuus HOM05D000076 ORTHO05D006537 4.0e-14 82.0 89 53.9
Cc11_g15960 Coffea canephora HOM05D000076 ORTHO05D006537 5.3e-14 81.6 89 53.9
Lsat_1_v5_gn_3_30300 Lactuca sativa HOM05D000076 ORTHO05D006537 9.0e-14 80.9 89 53.9
DCAR_029207 Daucus carota HOM05D000076 ORTHO05D006537 1.2e-13 80.5 89 53.9
ECA246G3556 Erigeron canadensis HOM05D000076 ORTHO05D006537 1.2e-13 80.5 89 53.9
Os02g0158800 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006537 1.2e-13 80.5 89 52.8
SEGI_23169 Sequoiadendron giganteum HOM05D000076 ORTHO05D006537 1.2e-13 80.5 88 53.4
CDE04G1448 Ceratophyllum demersum HOM05D000076 ORTHO05D006537 1.5e-13 80.1 89 52.8
DCAR_029364 Daucus carota HOM05D000076 ORTHO05D006537 1.5e-13 80.1 89 52.8
HanXRQChr17g0539951 Helianthus annuus HOM05D000076 ORTHO05D006537 1.5e-13 80.1 89 52.8
CAN.G272.5 Capsicum annuum HOM05D000076 ORTHO05D006537 2.0e-13 79.7 89 52.8
Solyc05g013730.3 Solanum lycopersicum HOM05D000076 ORTHO05D006537 2.0e-13 79.7 92 52.2
Sopen05g008650 Solanum pennellii HOM05D000076 ORTHO05D006537 2.0e-13 79.7 92 52.2
PGSC0003DMG400011727 Solanum tuberosum HOM05D000076 ORTHO05D006537 2.0e-13 79.7 92 52.2
Zm00001eb273490 Zea mays HOM05D000076 ORTHO05D006537 2.0e-13 79.7 89 51.7
Nitab4.5_0001978g0010 Nicotiana tabacum HOM05D000076 ORTHO05D006537 2.6e-13 79.3 89 53.9
Zm00001eb225920 Zea mays HOM05D000076 ORTHO05D006537 4.5e-13 78.6 89 50.6
Peaxi162Scf00128g00443 Petunia axillaris HOM05D000076 ORTHO05D006537 5.8e-13 78.2 89 53.9
unitig_62.g23663 Utricularia gibba HOM05D000076 ORTHO05D006537 5.8e-13 78.2 92 50.0
ATR0824G261 Amborella trichopoda HOM05D000076 ORTHO05D006537 9.9e-13 77.4 89 52.8
Hma1.2p1_0937F.1_g239040 Hydrangea macrophylla HOM05D000076 ORTHO05D006537 9.9e-13 77.4 92 53.3
SMO118G0203 Selaginella moellendorffii HOM05D000076 ORTHO05D006537 1.7e-12 76.6 92 48.9
Nitab4.5_0000524g0080 Nicotiana tabacum HOM05D000076 ORTHO05D006537 3.8e-12 75.5 89 52.8
Zm00001eb232610 Zea mays HOM05D000076 ORTHO05D006537 6.4e-12 74.7 89 49.4
unitig_52.g17180 Utricularia gibba HOM05D000076 ORTHO05D006537 8.4e-12 74.3 90 48.9
SalBow1G8493 Salvia bowleyana HOM05D000076 ORTHO05D006537 1.1e-11 73.9 64 62.5
AagrBONN_evm.TU.Sc2ySwM_362.575 Anthoceros agrestis HOM05D000076 ORTHO05D006537 1.4e-11 73.6 92 47.8
Pp3c17_17610 Physcomitrium patens HOM05D000076 ORTHO05D006537 1.4e-11 73.6 74 54.1
RcHm_v2.0_Chr2g0125271 Rosa chinensis HOM05D000076 ORTHO05D343543 4.0e-06 55.5 51 60.8
HPP92_016982 Vanilla planifolia HOM05D000076 ORTHO05D006537 5.3e-06 55.1 49 63.3


User provided reference genes

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