Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.3e-222 775.4 428 100.0
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.9e-209 731.9 428 94.6
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-207 726.5 427 94.4
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 3.5e-207 724.9 427 94.4
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.3e-205 718.0 426 93.7
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 6.9e-171 604.4 397 84.4
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 2.4e-107 393.3 392 63.0
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 4.7e-103 379.0 372 62.6
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 3.4e-101 372.9 391 60.6
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 4.5e-85 319.3 368 54.1
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 9.9e-85 318.2 376 51.3
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 8.4e-84 315.1 372 50.0
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 9.3e-83 311.6 369 51.5
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 1.2e-82 311.2 368 50.3
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 2.7e-82 310.1 357 53.5
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 1.0e-81 308.1 366 51.4
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 3.0e-81 306.6 366 50.5
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 1.5e-80 304.3 383 49.3
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 1.9e-80 303.9 350 54.0
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 3.3e-80 303.1 358 52.2
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 5.6e-80 302.4 386 51.3
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 7.4e-80 302.0 373 52.0
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.3e-79 301.2 384 51.3
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 2.8e-79 300.1 360 51.1
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 8.1e-79 298.5 377 50.1
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 1.8e-78 297.4 353 53.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 2.4e-78 297.0 355 51.0
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 3.1e-78 296.6 400 47.0
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 5.3e-78 295.8 368 49.5
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 2.6e-77 293.5 405 46.2
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 3.4e-77 293.1 372 48.9
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 2.2e-76 290.4 375 50.9
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 2.2e-76 290.4 367 49.9
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 6.4e-76 288.9 387 49.1
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 4.2e-75 286.2 387 48.6
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 6.0e-74 282.3 381 47.2
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.0e-73 281.6 362 48.6
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 1.3e-71 274.6 355 48.7
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 4.8e-71 272.7 369 47.7
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 1.4e-70 271.2 391 45.3
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 6.9e-70 268.9 386 44.8
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 6.9e-70 268.9 389 44.7
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 9.0e-70 268.5 366 51.1
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 1.2e-69 268.1 374 46.0
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 3.4e-69 266.5 373 46.9
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 4.5e-69 266.2 383 46.7
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 5.8e-69 265.8 385 44.4
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 7.6e-69 265.4 392 44.6
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.3e-68 264.6 353 49.6
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.7e-68 264.2 388 44.1
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.2e-68 263.8 385 44.2
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 2.9e-68 263.5 365 47.4
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 6.5e-68 262.3 367 46.3
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 6.5e-68 262.3 366 45.9
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 6.5e-68 262.3 371 47.2
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 6.5e-68 262.3 368 44.3
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 2.7e-66 256.9 362 43.9
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 4.6e-66 256.1 368 44.3
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 4.6e-66 256.1 370 44.9
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 8.7e-65 251.9 367 45.5
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 1.1e-64 251.5 382 44.5
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 1.5e-64 251.1 373 43.2
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 2.5e-64 250.4 356 46.6
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 2.5e-64 250.4 352 47.4
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 1.4e-62 244.6 369 45.3
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 4.1e-62 243.0 394 42.4
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 5.3e-62 242.7 395 42.5
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 9.0e-62 241.9 335 44.8
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 5.9e-61 239.2 365 42.7
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 7.7e-61 238.8 334 46.4
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.1e-59 235.0 372 43.8
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.4e-59 234.6 369 45.0
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 1.9e-59 234.2 350 45.4
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 3.2e-59 233.4 354 46.3
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 9.4e-59 231.9 374 41.7
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 9.4e-59 231.9 359 46.0
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.2e-58 231.5 384 42.7
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 8.8e-57 225.3 364 40.4
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 8.8e-57 225.3 357 44.3
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.2e-55 220.7 364 40.4
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 2.2e-55 220.7 263 51.7
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 3.7e-55 219.9 322 44.1
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 4.8e-55 219.5 309 46.3
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.2e-53 214.9 341 44.3
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.1e-51 208.4 348 43.4
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 1.4e-49 201.4 346 40.8
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 1.8e-49 201.1 397 35.8
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 3.1e-46 190.3 332 39.5
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 7.0e-46 189.1 212 53.8
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 2.2e-44 184.1 277 44.4
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 6.5e-44 182.6 392 34.4
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.5e-43 181.4 367 36.5
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 1.9e-43 181.0 391 36.1
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 9.4e-43 178.7 268 44.0
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 5.7e-40 169.5 360 36.7
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 6.3e-39 166.0 306 38.6
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 2.4e-38 164.1 391 34.3
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 2.4e-38 164.1 333 38.7
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 7.7e-37 159.1 210 47.1
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 4.2e-35 153.3 314 38.5
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 9.4e-35 152.1 283 36.7
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 9.4e-35 152.1 343 36.4
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.6e-32 144.1 177 46.9
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 8.3e-31 139.0 297 35.7
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.0e-28 132.1 387 31.8
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 2.2e-28 131.0 371 28.8
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.5e-27 128.3 361 31.6
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.9e-27 127.9 356 31.7
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 3.2e-27 127.1 354 30.5
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 4.2e-27 126.7 361 30.7
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 4.2e-27 126.7 358 31.0
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 2.1e-26 124.4 359 30.6
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.7e-26 124.0 290 32.4
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 4.7e-26 123.2 363 30.6
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 8.0e-26 122.5 368 27.4
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.4e-25 121.7 353 30.9
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.4e-25 121.7 353 30.9
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 3.0e-25 120.6 348 28.7
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-24 118.2 348 30.5
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 1.7e-23 114.8 368 28.0
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.7e-23 114.8 332 28.0
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 3.7e-23 113.6 362 28.2
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 8.3e-23 112.5 284 29.9
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.4e-22 111.7 276 34.8
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 9.1e-22 109.0 298 28.9
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 1.6e-21 108.2 298 28.9
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 2.0e-21 107.8 316 28.2
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.0e-21 107.8 295 31.5
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 2.7e-21 107.5 310 28.1
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 5.9e-21 106.3 310 27.7
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.9e-15 86.7 222 28.8
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 4.9e-15 86.7 332 25.0
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 4.9e-15 86.7 302 28.5
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 6.3e-15 86.3 225 28.4
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 5.4e-14 83.2 264 26.9
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 5.9e-13 79.7 133 37.6
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 2.5e-11 74.3 161 31.1
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 9.5e-11 72.4 197 30.5
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 9.5e-11 72.4 197 30.5
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 9.5e-11 72.4 197 30.5
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 2.8e-10 70.9 214 26.2
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 1.8e-09 68.2 143 30.1
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 1.8e-09 68.2 143 30.1
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-06 58.9 132 30.3
Manes.09G186700 Manihot esculenta HOM05D000592 ORTHO05D000900 1.9e-06 58.2 252 23.4
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 7.0e-06 56.2 163 28.8
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 9.2e-06 55.8 162 29.0
Migut.K01041 Erythranthe guttata HOM05D000592 ORTHO05D000900 9.2e-06 55.8 84 34.5


User provided reference genes

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