Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-29 131.7 60 100.0
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.9e-14 81.3 52 75.0
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 2.9e-14 81.3 52 75.0
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.9e-14 81.3 52 75.0
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 2.9e-14 81.3 52 75.0
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 2.9e-14 81.3 52 75.0
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.7e-14 80.9 52 75.0
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.7e-14 80.9 52 75.0
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.7e-14 80.9 52 75.0
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.7e-14 80.9 52 75.0
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.7e-14 80.9 52 75.0
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 6.4e-14 80.1 46 82.6
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 6.4e-14 80.1 45 77.8
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 6.4e-14 80.1 45 77.8
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.3e-14 79.7 46 82.6
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.4e-13 79.0 43 79.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.9e-13 78.6 52 69.2
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-13 78.2 46 80.4
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 69.2
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 71.2
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 2.4e-13 78.2 52 73.1
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.2e-13 77.8 39 84.6
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.2e-13 77.8 39 84.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 5.4e-13 77.0 45 71.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 5.4e-13 77.0 46 80.4
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 5.4e-13 77.0 46 80.4
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 5.4e-13 77.0 52 71.2
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 7.1e-13 76.6 52 69.2
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 7.1e-13 76.6 46 80.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.1e-13 76.6 52 71.2
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 7.1e-13 76.6 52 67.3
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 7.1e-13 76.6 46 73.9
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 9.2e-13 76.3 46 78.3
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 9.2e-13 76.3 46 78.3
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.2e-12 75.9 52 69.2
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.2e-12 75.9 52 69.2
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-12 75.9 34 97.1
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-12 75.9 34 97.1
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.2e-12 75.9 46 78.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.2e-12 75.9 52 71.2
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.2e-12 75.9 46 78.3
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.6e-12 75.5 46 78.3
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.6e-12 75.5 52 69.2
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.6e-12 75.5 52 71.2
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.6e-12 75.5 52 71.2
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.6e-12 75.5 52 71.2
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.1e-12 75.1 42 78.6
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 2.1e-12 75.1 52 69.2
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.1e-12 75.1 52 67.3
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.1e-12 75.1 46 76.1
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.7e-12 74.7 43 76.7
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.7e-12 74.7 45 71.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.7e-12 74.7 46 76.1
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.7e-12 74.7 46 76.1
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.5e-12 74.3 49 77.6
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 3.5e-12 74.3 46 76.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 3.5e-12 74.3 52 69.2
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 4.6e-12 73.9 52 69.2
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 4.6e-12 73.9 46 78.3
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 4.6e-12 73.9 46 73.9
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.6e-12 73.9 47 74.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 6.0e-12 73.6 46 76.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 6.0e-12 73.6 46 76.1
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 6.0e-12 73.6 52 67.3
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 6.0e-12 73.6 46 78.3
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 6.0e-12 73.6 46 78.3
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.8e-12 73.2 43 74.4
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 7.8e-12 73.2 46 76.1
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 7.8e-12 73.2 52 67.3
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 7.8e-12 73.2 46 76.1
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 7.8e-12 73.2 46 76.1
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 7.8e-12 73.2 46 76.1
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.8e-12 73.2 46 76.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.0e-11 72.8 52 69.2
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.0e-11 72.8 44 72.7
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.3e-11 72.4 46 73.9
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.3e-11 72.4 46 73.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.3e-11 72.4 50 72.0
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.3e-11 72.4 46 73.9
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-11 72.4 50 72.0
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.7e-11 72.0 38 76.3
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.7e-11 72.0 38 84.2
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.7e-11 72.0 39 79.5
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.3e-11 71.6 46 73.9
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.3e-11 71.6 46 73.9
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.3e-11 71.6 46 73.9
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 2.3e-11 71.6 50 66.0
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.3e-11 71.6 46 73.9
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 2.3e-11 71.6 46 76.1
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.3e-11 71.6 46 73.9
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 3.0e-11 71.2 44 72.7
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 6.6e-11 70.1 39 74.4
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 6.6e-11 70.1 46 71.7
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 6.6e-11 70.1 42 73.8
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 8.6e-11 69.7 46 71.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.1e-10 69.3 46 69.6
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.1e-10 69.3 46 69.6
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.5e-10 68.9 52 65.4
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.5e-10 68.9 46 69.6
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.9e-10 68.6 37 83.8
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 71.7
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.3e-10 67.8 46 69.6
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 4.3e-10 67.4 52 63.5
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 4.3e-10 67.4 46 67.4
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 4.3e-10 67.4 38 76.3
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.6e-10 67.0 48 62.5
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.2e-09 65.9 38 78.9
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.6e-09 65.5 38 73.7
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.6e-09 65.5 38 78.9
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.6e-09 65.5 38 78.9
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.6e-09 65.5 54 64.8
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.6e-09 65.5 44 70.5
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.8e-09 64.7 39 71.8
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.2e-09 63.5 56 60.7
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 8.1e-09 63.2 47 63.8
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.1e-08 62.8 76 47.4
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-08 62.4 65 53.8
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.4e-08 62.4 44 65.9
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.4e-08 62.4 80 46.2
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.8e-08 62.0 74 47.3
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.3e-08 61.6 67 47.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 3.1e-08 61.2 46 69.6
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 3.1e-08 61.2 75 49.3
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 5.2e-08 60.5 47 59.6
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 6.8e-08 60.1 46 65.2
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 6.8e-08 60.1 46 65.2
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 8.9e-08 59.7 38 73.7
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.5e-07 58.9 36 77.8
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.5e-07 58.9 33 72.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.8e-07 57.0 39 66.7
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.8e-07 57.0 36 75.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 5.8e-07 57.0 36 77.8
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 9.9e-07 56.2 47 53.2
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.3e-06 55.8 29 79.3
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.7e-06 55.5 28 82.1
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.7e-06 55.5 31 71.0
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 2.2e-06 55.1 36 72.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.9e-06 54.7 37 67.6
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.9e-06 54.7 29 79.3
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 3.7e-06 54.3 36 69.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 3.7e-06 54.3 36 69.4
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.9e-06 53.9 36 66.7
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 4.9e-06 53.9 44 56.8
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 6.4e-06 53.5 54 53.7
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.4e-06 53.5 37 64.9
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 8.4e-06 53.1 29 72.4


User provided reference genes

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