Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-41 172.6 92 100.0
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.1e-40 168.7 92 96.7
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.2e-37 158.7 85 98.8
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.8e-36 155.6 84 97.6
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.4e-31 139.4 95 83.2
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.1e-25 119.8 78 82.1
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 8.0e-24 113.6 78 78.2
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.8e-23 112.5 109 61.5
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.3e-21 106.3 106 62.3
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.7e-21 105.9 107 61.7
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.7e-21 105.9 98 66.3
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.7e-21 105.9 98 66.3
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 8.3e-21 103.6 107 59.8
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.4e-20 100.9 102 58.8
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.2e-19 99.8 99 56.6
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.0e-19 99.0 99 60.6
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.0e-19 99.0 87 66.7
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.7e-19 98.6 102 61.8
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.7e-19 98.6 102 57.8
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.7e-19 98.6 68 75.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 4.5e-19 97.8 68 73.5
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.5e-19 97.8 72 68.1
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 5.9e-19 97.4 103 58.3
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.9e-19 97.4 99 59.6
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 7.7e-19 97.1 100 56.0
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.0e-18 96.7 68 72.1
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.9e-18 95.1 68 70.6
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.9e-18 95.1 99 58.6
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.5e-18 94.0 88 56.8
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.5e-18 94.0 100 54.0
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.1e-17 93.2 98 55.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.1e-17 93.2 93 57.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.5e-17 92.8 99 56.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.5e-17 92.8 99 56.6
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.5e-17 92.8 68 67.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.5e-17 92.0 89 58.4
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.2e-17 91.3 100 51.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 5.5e-17 90.9 100 53.0
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.5e-17 90.1 77 58.4
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.2e-16 89.7 100 53.0
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.6e-16 89.4 100 51.0
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.6e-16 89.4 99 50.5
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.1e-16 89.0 87 57.5
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.1e-16 89.0 98 54.1
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.8e-16 88.6 74 60.8
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 3.6e-16 88.2 98 56.1
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.7e-16 87.8 98 54.1
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.7e-16 87.8 98 54.1
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 4.7e-16 87.8 97 55.7
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 8.0e-16 87.0 90 54.4
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 8.0e-16 87.0 63 73.0
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 8.0e-16 87.0 100 50.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.0e-15 86.7 70 62.9
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.4e-15 86.3 102 47.1
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.4e-15 86.3 97 52.6
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.8e-15 85.9 98 51.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.8e-15 85.9 98 51.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.8e-15 85.9 89 55.1
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-15 85.5 99 54.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 3.0e-15 85.1 89 55.1
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.0e-15 84.7 77 57.1
RcHm_v2.0_Chr7g0230041 Rosa chinensis HOM05D004289 ORTHO05D005141 4.0e-15 84.7 61 70.5
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 4.0e-15 84.7 97 55.7
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 5.2e-15 84.3 68 63.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 5.2e-15 84.3 95 54.7
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 5.2e-15 84.3 61 70.5
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 5.2e-15 84.3 93 53.8
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 6.8e-15 84.0 76 63.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 6.8e-15 84.0 94 53.2
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 6.8e-15 84.0 97 52.6
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 8.8e-15 83.6 89 55.1
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 1.2e-14 83.2 87 54.0
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.5e-14 82.8 87 55.2
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.5e-14 82.8 91 52.7
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-14 82.8 86 54.7
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.0e-14 82.4 86 54.7
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 2.0e-14 82.4 92 50.0
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.0e-14 82.4 73 60.3
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.0e-14 82.4 99 49.5
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.0e-14 82.4 98 49.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.0e-14 82.4 94 50.0
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.6e-14 82.0 72 58.3
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.6e-14 82.0 99 52.5
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.6e-14 82.0 90 50.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 2.6e-14 82.0 78 60.3
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.6e-14 82.0 86 53.5
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.4e-14 81.6 89 53.9
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.4e-14 81.6 90 48.9
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 4.4e-14 81.3 54 74.1
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.7e-14 80.9 89 52.8
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 5.7e-14 80.9 74 62.2
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 5.7e-14 80.9 102 51.0
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 5.7e-14 80.9 75 58.7
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 7.5e-14 80.5 65 63.1
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 7.5e-14 80.5 97 49.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 9.8e-14 80.1 73 60.3
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 9.8e-14 80.1 94 50.0
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.3e-13 79.7 103 47.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.3e-13 79.7 89 50.6
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.3e-13 79.7 100 49.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.3e-13 79.7 92 48.9
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.7e-13 79.3 92 52.2
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.7e-13 79.3 103 48.5
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.8e-13 78.6 88 53.4
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.8e-13 78.6 108 47.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.9e-13 77.8 86 50.0
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 4.9e-13 77.8 63 63.5
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.9e-13 77.8 100 49.0
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.3e-13 77.4 98 48.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.3e-13 77.4 68 57.4
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.1e-12 76.6 87 50.6
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-12 76.6 87 50.6
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.1e-12 76.6 61 63.9
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.1e-12 76.6 84 48.8
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.1e-12 76.6 96 47.9
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.1e-12 76.6 71 52.1
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.1e-12 76.6 71 52.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 3.1e-12 75.1 100 45.0
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 4.1e-12 74.7 97 50.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 9.2e-12 73.6 69 56.5
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.2e-11 73.2 68 58.8
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.6e-11 72.8 94 51.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 2.0e-11 72.4 68 51.5
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.0e-11 72.4 70 55.7
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.7e-11 72.0 79 53.2
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.7e-11 72.0 53 67.9
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.5e-11 71.6 100 47.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.5e-11 71.6 83 51.8
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.9e-11 70.9 44 75.0
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 5.9e-11 70.9 73 47.9
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 7.8e-11 70.5 65 53.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.3e-10 68.9 67 43.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.3e-10 68.9 53 60.4
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 6.6e-10 67.4 99 45.5
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 8.6e-10 67.0 70 51.4
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.9e-09 65.9 36 86.1
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 3.3e-09 65.1 37 81.1
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 4.3e-09 64.7 53 62.3
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 9.5e-09 63.5 98 44.9
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.6e-08 61.6 75 49.3
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.7e-08 61.2 40 67.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.7e-08 61.2 40 67.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.7e-08 61.2 40 67.5
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.0e-08 60.5 90 41.1
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 8.0e-08 60.5 55 58.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.4e-07 59.7 68 48.5
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.3e-07 58.9 72 51.4
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.3e-07 58.9 100 41.0
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.0e-07 58.5 61 59.0
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 4.0e-07 58.2 82 45.1
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 4.0e-07 58.2 27 100.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 4.0e-07 58.2 69 40.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 6.8e-07 57.4 82 42.7
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 6.8e-07 57.4 77 44.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 6.8e-07 57.4 69 44.9
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 6.8e-07 57.4 69 42.0
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 8.9e-07 57.0 76 46.1
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.5e-06 56.2 76 44.7
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.5e-06 56.2 90 42.2
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.6e-06 55.5 82 41.5
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 3.4e-06 55.1 77 46.8
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 3.4e-06 55.1 87 39.1
QL11p051756 Quercus lobata HOM05D004289 ORTHO05D005141 4.4e-06 54.7 73 49.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.7e-06 54.3 69 42.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.7e-06 54.3 69 42.0
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.7e-06 54.3 74 45.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 5.7e-06 54.3 68 42.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 5.7e-06 54.3 69 44.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 5.7e-06 54.3 61 54.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 5.7e-06 54.3 69 39.1
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 5.7e-06 54.3 65 50.8
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 7.5e-06 53.9 70 45.7
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 7.5e-06 53.9 70 45.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 7.5e-06 53.9 70 45.7
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 7.5e-06 53.9 98 37.8
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 9.8e-06 53.5 70 45.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 9.8e-06 53.5 74 45.9


User provided reference genes

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