Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-243 845.5 464 100.0
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.0e-236 821.6 464 92.0
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.4e-235 817.0 463 93.3
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.3e-234 816.2 466 93.1
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.0e-231 804.3 479 89.1
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.4e-225 785.4 463 90.1
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 4.7e-197 691.4 463 76.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 9.8e-195 683.7 466 76.6
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.7e-184 649.0 419 82.8
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 4.0e-180 635.2 467 67.7
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 8.9e-180 634.0 407 75.7
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 4.4e-179 631.7 468 74.6
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 4.9e-178 628.2 407 73.7
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 2.3e-175 619.4 463 69.8
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.2e-173 613.6 408 73.8
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.6e-173 613.2 394 73.9
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.0e-173 610.9 409 71.9
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 8.9e-172 607.4 409 69.9
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.3e-170 603.6 355 81.7
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.7e-170 603.2 395 74.4
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 6.4e-170 601.3 420 68.8
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 6.4e-170 601.3 412 69.2
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.4e-169 600.1 406 70.9
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 4.6e-168 595.1 409 72.1
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 3.9e-167 592.0 422 67.8
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 5.0e-167 591.7 403 69.5
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 8.6e-167 590.9 409 68.5
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.9e-166 589.7 378 73.3
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.3e-166 588.6 404 69.3
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 4.3e-166 588.6 403 69.2
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 2.8e-165 585.9 412 68.9
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 2.8e-165 585.9 372 73.9
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.8e-165 585.9 436 66.3
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 4.7e-165 585.1 420 68.8
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.0e-164 582.0 396 71.0
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.5e-163 580.1 377 71.6
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.4e-163 578.9 394 71.6
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 4.4e-163 578.6 421 67.7
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 1.3e-162 577.0 379 73.1
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.7e-162 576.6 406 68.7
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.2e-162 576.2 366 72.7
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.2e-162 576.2 402 68.9
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.9e-162 575.9 364 74.7
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.9e-162 575.9 394 70.6
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 2.9e-162 575.9 372 74.5
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 3.7e-162 575.5 401 69.6
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 5.4e-161 571.6 405 67.2
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 5.4e-161 571.6 419 66.8
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 7.1e-161 571.2 364 74.2
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.2e-160 570.5 367 73.6
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.1e-160 569.7 406 66.7
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 3.5e-160 568.9 399 67.7
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 4.6e-160 568.5 398 67.1
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 4.6e-160 568.5 399 66.9
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 1.0e-159 567.4 403 66.7
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 1.0e-159 567.4 410 66.1
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.3e-159 567.0 377 71.4
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.7e-159 566.6 364 73.1
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 2.3e-159 566.2 405 65.9
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 6.6e-159 564.7 364 73.1
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 6.6e-159 564.7 409 67.2
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 8.6e-159 564.3 405 65.7
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.5e-158 563.5 360 72.8
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.9e-158 563.1 397 66.8
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.9e-158 563.1 397 66.8
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.9e-158 563.1 405 65.7
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.5e-158 562.8 369 73.4
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 3.3e-158 562.4 448 62.7
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 4.3e-158 562.0 376 70.2
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 5.6e-158 561.6 482 60.4
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 7.3e-158 561.2 400 66.5
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 7.3e-158 561.2 364 72.0
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.6e-157 560.1 441 62.4
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.1e-157 559.7 373 71.0
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.8e-157 559.3 331 77.9
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.8e-157 559.3 402 66.9
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.6e-157 558.9 408 65.9
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 4.7e-157 558.5 394 66.2
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 4.7e-157 558.5 394 66.2
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 8.1e-157 557.8 401 65.1
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-156 556.2 394 66.0
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.3e-156 556.2 402 66.7
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 3.1e-156 555.8 432 62.7
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 4.0e-156 555.4 356 73.3
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 4.0e-156 555.4 530 56.4
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 6.8e-156 554.7 400 65.2
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.6e-155 552.7 407 64.1
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 3.4e-155 552.4 407 64.1
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 2.2e-154 549.7 397 64.7
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 4.9e-154 548.5 407 63.6
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 4.9e-154 548.5 407 63.6
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 6.4e-154 548.1 363 69.7
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.9e-153 546.6 404 64.9
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 9.6e-150 534.3 360 68.6
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 2.8e-149 532.7 417 62.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 8.1e-149 531.2 360 68.1
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 8.1e-149 531.2 359 68.0
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 8.9e-148 527.7 327 74.6
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 3.4e-147 525.8 385 66.5
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 2.2e-146 523.1 402 63.4
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.9e-146 522.7 405 64.2
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.2e-145 519.2 331 72.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 5.4e-145 518.5 365 66.8
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 7.1e-145 518.1 405 64.7
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 9.3e-145 517.7 434 61.8
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 9.3e-145 517.7 350 69.4
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 3.5e-144 515.8 372 67.7
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.3e-143 513.1 385 65.7
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.3e-143 513.1 385 65.7
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.5e-142 510.4 353 68.8
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.3e-142 509.2 427 59.5
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.1e-141 506.5 400 62.0
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 2.7e-136 489.6 339 70.8
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 2.7e-136 489.6 379 60.4
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.5e-134 483.8 338 67.2
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.6e-133 480.3 391 62.4
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-133 480.3 338 66.9
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 9.0e-132 474.6 330 66.4
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 8.4e-130 468.0 405 58.3
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 3.5e-128 462.6 291 71.5
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 6.0e-128 461.8 381 59.1
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 2.0e-123 446.8 365 55.1
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.9e-122 443.0 361 60.9
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 8.4e-122 441.4 293 70.6
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 4.2e-121 439.1 354 58.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 3.5e-120 436.0 368 58.2
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.5e-118 430.6 286 72.0
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 1.2e-115 421.0 381 55.6
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 5.7e-110 402.1 246 76.8
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.5e-107 394.0 373 51.5
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.1e-105 387.9 253 74.7
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.6e-104 382.5 249 70.3
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 7.9e-104 381.7 217 79.3
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 9.4e-97 358.2 206 80.1
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 8.8e-79 298.5 349 42.4
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.2e-74 283.9 239 59.8
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 3.6e-64 250.0 294 42.9
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 2.6e-62 243.8 338 41.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.6e-50 202.2 176 59.1
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.8e-39 167.9 98 75.5
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.3e-39 167.5 111 71.2
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.5e-33 148.3 106 66.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.7e-26 124.8 77 74.0
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 8.4e-21 105.9 108 52.8
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 2.1e-19 101.3 95 54.7
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 6.7e-18 96.3 62 71.0
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.5e-17 95.1 54 85.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-17 94.0 55 72.7
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-17 94.0 55 72.7
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.3e-17 94.0 55 72.7
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.6e-17 92.4 55 70.9
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.3e-16 92.0 93 46.2
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.6e-16 90.5 54 70.4
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 1.3e-08 65.5 75 49.3
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.8e-08 64.3 32 81.2
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 2.8e-08 64.3 53 64.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.0e-06 58.2 35 68.6
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.0e-06 58.2 35 68.6


User provided reference genes

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