Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 0.0e+00 1477.2 739 100.0
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 0.0e+00 1254.6 746 86.9
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 0.0e+00 1180.2 739 84.2
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 0.0e+00 1085.1 745 77.2
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 5.2e-307 1057.4 744 73.3
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-296 1022.3 636 81.6
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 2.9e-294 1015.0 743 71.9
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 5.8e-282 974.2 745 67.5
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.6e-268 929.5 741 69.2
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.4e-267 926.4 735 64.5
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 1.4e-267 926.4 757 63.5
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.4e-266 921.8 770 63.1
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 7.5e-266 920.6 803 62.8
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 1.3e-265 919.8 742 63.9
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 4.6e-263 911.4 656 69.1
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 1.5e-261 906.4 743 64.2
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 1.9e-261 906.0 748 62.0
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 7.3e-261 904.0 747 62.4
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 2.8e-260 902.1 725 62.5
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 6.8e-259 897.5 716 62.4
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 1.2e-258 896.7 742 62.0
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 4.4e-258 894.8 723 62.0
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 5.8e-258 894.4 665 66.9
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.1e-256 890.2 712 63.6
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 6.0e-255 884.4 711 61.6
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 5.1e-254 881.3 752 60.9
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 1.1e-253 880.2 733 64.4
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 9.6e-253 877.1 714 62.7
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 3.6e-252 875.2 737 62.6
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 2.6e-250 869.0 711 62.6
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 4.4e-250 868.2 725 62.1
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 1.3e-249 866.7 733 61.5
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 2.2e-249 865.9 704 62.8
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 4.9e-249 864.8 781 57.4
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 8.4e-249 864.0 778 58.1
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 5.4e-248 861.3 743 60.7
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 3.5e-247 858.6 790 57.6
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.3e-246 856.7 647 65.8
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 5.1e-246 854.7 783 56.8
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 6.6e-246 854.4 732 61.5
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 9.6e-245 850.5 706 62.7
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 2.8e-244 849.0 697 63.4
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 3.1e-243 845.5 683 63.4
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 4.0e-243 845.1 697 61.8
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.2e-242 843.6 628 66.1
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 4.9e-241 838.2 736 59.9
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 4.9e-241 838.2 738 59.8
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 6.4e-241 837.8 729 58.8
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.1e-240 837.0 564 77.5
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 5.4e-240 834.7 628 65.3
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 8.7e-238 827.4 652 62.9
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 8.7e-238 827.4 788 56.3
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.5e-237 826.6 624 67.0
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 7.4e-237 824.3 641 63.8
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 7.4e-237 824.3 727 58.7
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 2.8e-236 822.4 656 62.7
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.5e-234 816.6 648 63.1
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 2.6e-234 815.8 884 51.8
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.3e-233 813.5 752 56.8
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.7e-233 813.1 641 62.9
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 2.5e-232 809.3 673 61.2
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 9.3e-232 807.4 637 63.4
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.6e-231 806.6 633 62.1
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 1.3e-230 803.5 728 57.6
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 2.5e-229 799.3 648 61.4
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 8.2e-228 794.3 1026 45.1
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.8e-227 793.1 754 56.4
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 1.2e-226 790.4 656 60.4
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 7.9e-223 777.7 573 67.4
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 5.7e-221 771.5 738 56.5
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 2.8e-220 769.2 741 57.8
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 8.2e-220 767.7 640 59.8
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.1e-219 767.3 567 66.8
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.2e-218 763.8 567 68.1
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 2.2e-217 759.6 598 64.0
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 3.8e-217 758.8 574 66.4
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 3.2e-216 755.7 589 65.2
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 2.7e-215 752.7 572 63.6
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.6e-207 725.7 658 58.2
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.5e-205 720.3 533 68.3
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 4.8e-204 715.3 563 62.0
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 8.2e-204 714.5 522 66.5
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 4.4e-197 692.2 536 65.9
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.2e-192 676.0 528 63.4
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 4.4e-189 665.6 562 59.6
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.3e-188 661.8 451 70.3
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 1.8e-187 660.2 602 57.6
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.0e-186 656.8 550 59.1
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 3.8e-185 652.5 731 51.0
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.5e-181 640.6 645 53.3
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 4.7e-167 592.4 679 51.0
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.3e-166 590.1 629 50.2
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 2.2e-164 583.6 475 62.5
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.9e-164 582.4 705 51.9
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.3e-160 569.3 754 46.4
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 2.4e-155 553.5 391 69.1
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.2e-154 551.2 708 45.9
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 4.0e-134 483.0 749 39.0
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 1.4e-123 448.0 392 61.5
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.3e-113 414.8 422 51.9
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.7e-111 406.8 336 59.5
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-98 365.2 244 80.7
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 3.1e-94 350.5 314 60.2
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 4.1e-86 323.6 230 66.5
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 2.2e-84 317.8 259 65.3
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 6.7e-81 306.2 312 56.1
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 7.7e-77 292.7 284 57.7
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 2.8e-71 274.2 245 55.9
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 6.5e-68 263.1 316 50.0
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-64 252.3 134 97.0
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.8e-60 237.3 209 65.1
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 5.6e-51 206.8 204 49.5
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 8.9e-49 199.5 201 51.2
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.7e-47 195.3 207 52.7
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 8.3e-47 193.0 199 51.8
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-43 182.2 170 61.8
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 2.8e-42 177.9 91 85.7
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-39 168.7 241 49.0
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.4e-38 164.9 115 68.7
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 7.1e-30 136.7 165 49.7
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 9.2e-30 136.3 691 24.9
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 2.7e-29 134.8 716 21.9
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 5.1e-28 130.6 617 23.8
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.1e-27 129.4 129 57.4
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 1.5e-27 129.0 91 72.5
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 5.6e-27 127.1 78 67.9
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 2.1e-26 125.2 343 25.7
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 3.1e-25 121.3 85 62.4
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.2e-24 119.4 85 71.8
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 2.7e-21 108.2 63 84.1
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 3.6e-18 97.8 59 74.6
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 4.5e-16 90.9 681 22.0


User provided reference genes

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