Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.0e-197 690.6 350 100.0
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.0e-197 690.6 350 100.0
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-174 615.9 320 95.9
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 4.2e-174 614.8 320 95.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.2e-174 614.8 320 95.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-173 612.5 320 95.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 4.8e-154 548.1 320 86.2
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.5e-147 526.6 268 95.9
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.9e-130 468.4 326 72.1
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 3.9e-111 405.6 317 65.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.8e-98 362.5 314 58.6
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.6e-93 345.9 307 56.7
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.2e-91 340.9 304 57.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 3.0e-87 326.2 310 53.2
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 3.6e-85 319.3 299 51.5
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 2.0e-83 313.5 308 53.9
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.3e-82 310.8 304 51.0
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.3e-82 310.8 297 52.2
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.4e-81 306.6 308 50.3
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 9.3e-81 304.7 300 50.0
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 6.0e-80 302.0 301 51.8
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 7.9e-80 301.6 312 52.2
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.3e-79 300.1 304 51.6
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 9.6e-78 294.7 270 53.7
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.7e-77 292.7 300 51.0
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 4.8e-77 292.4 300 50.7
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 2.4e-76 290.0 271 53.1
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.0e-76 289.3 300 50.3
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 1.2e-75 287.7 311 49.5
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.4e-75 286.2 305 49.5
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 7.6e-75 285.0 229 60.7
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 3.8e-74 282.7 324 47.2
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.4e-74 282.0 298 48.7
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.4e-73 280.8 310 49.4
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.2e-72 277.7 303 48.8
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 4.6e-72 275.8 315 48.6
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.3e-71 273.5 265 50.6
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 5.1e-71 272.3 305 45.9
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.1e-70 271.2 265 51.3
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 7.4e-70 268.5 276 47.5
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.1e-69 266.9 274 48.2
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.4e-68 263.5 300 47.7
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 3.1e-68 263.1 277 49.5
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 6.9e-68 261.9 254 51.6
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.5e-67 259.2 363 41.9
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.3e-66 257.7 254 50.8
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.9e-66 256.5 327 41.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 6.5e-66 255.4 323 44.0
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 6.5e-66 255.4 279 47.3
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 6.5e-66 255.4 333 43.5
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 8.4e-66 255.0 323 44.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.4e-66 255.0 304 45.7
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.4e-65 254.2 255 50.6
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.4e-65 254.2 302 45.7
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.9e-65 253.8 323 43.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.9e-65 253.8 254 50.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.9e-65 253.8 254 50.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.9e-65 253.8 254 50.0
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 3.2e-65 253.1 275 49.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 3.2e-65 253.1 239 52.3
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 4.2e-65 252.7 264 49.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 4.2e-65 252.7 254 50.0
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 4.2e-65 252.7 297 45.5
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 7.1e-65 251.9 292 43.5
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 9.3e-65 251.5 308 44.5
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.6e-64 250.8 332 44.0
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.0e-64 248.8 255 49.0
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.8e-63 247.3 301 47.2
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.3e-63 246.9 302 43.0
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.0e-63 246.5 310 44.8
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 5.1e-63 245.7 256 46.1
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 6.7e-63 245.4 253 49.8
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.1e-62 244.6 253 47.4
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.5e-62 243.4 301 41.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.6e-61 240.7 248 48.8
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.4e-60 237.7 292 45.9
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 3.1e-60 236.5 293 43.3
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 6.9e-60 235.3 268 42.5
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 4.5e-59 232.6 294 42.9
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.3e-58 231.1 260 48.1
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.2e-58 230.3 256 48.4
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.9e-57 227.3 256 48.0
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 9.4e-57 224.9 253 44.7
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.4e-55 221.1 256 44.5
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 2.5e-54 216.9 291 40.5
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.7e-54 214.9 256 43.4
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.2e-53 213.8 300 41.7
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.3e-53 212.2 264 42.0
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 3.1e-52 209.9 182 54.9
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.3e-52 209.1 248 42.7
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.9e-52 208.8 248 42.7
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.1e-52 208.4 248 42.7
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.1e-52 208.4 248 42.7
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.5e-51 207.6 283 41.7
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-51 207.6 248 42.3
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-51 207.6 248 42.7
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-51 207.6 248 42.3
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.4e-51 206.5 248 42.3
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.4e-51 206.5 248 42.3
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.4e-51 206.5 243 46.9
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 2.9e-50 203.4 313 39.0
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-50 203.0 248 42.3
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.1e-49 201.4 217 50.7
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-47 194.5 230 44.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 8.8e-47 191.8 274 42.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 2.6e-46 190.3 297 37.4
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.3e-46 189.9 305 39.0
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 5.7e-46 189.1 322 36.6
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.8e-45 186.8 302 39.4
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.8e-45 186.8 286 39.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 8.2e-45 185.3 155 59.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.1e-44 184.9 312 38.1
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.8e-44 184.1 256 40.6
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.4e-44 183.7 272 38.6
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.4e-44 183.7 294 36.7
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 5.3e-44 182.6 272 40.4
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 5.3e-44 182.6 272 40.4
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.5e-43 181.0 279 38.7
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 3.5e-43 179.9 272 39.7
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.0e-42 178.3 307 39.4
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-41 174.5 168 47.0
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.5e-41 173.7 244 36.5
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-41 172.2 168 47.0
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-41 172.2 168 47.0
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.7e-40 170.2 276 39.5
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.7e-40 170.2 246 39.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-40 169.5 172 45.9
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 5.2e-39 166.0 246 39.0
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.6e-38 163.7 207 42.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.1e-36 158.3 296 35.5
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.4e-36 157.1 208 40.4
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.2e-32 144.8 266 34.6
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.7e-32 142.9 131 55.0
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 9.7e-30 135.2 142 48.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 5.0e-26 122.9 203 35.5
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 8.5e-26 122.1 204 33.3
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-25 120.6 161 41.6
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-21 107.1 135 41.5
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.0e-19 100.9 102 47.1
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 8.6e-18 95.5 199 30.7
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 3.3e-17 93.6 207 31.9
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.6e-11 74.7 92 43.5
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.9e-09 67.8 74 43.2


User provided reference genes

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