Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-199 699.5 365 100.0
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.1e-156 555.1 376 81.9
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 7.0e-156 554.3 375 81.3
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.9e-154 548.5 375 80.8
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.1e-153 547.0 375 80.5
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 7.3e-153 544.3 375 80.3
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 3.7e-141 505.4 375 74.4
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 6.4e-109 398.3 375 61.3
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.1e-105 387.5 375 60.0
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 5.1e-98 362.1 372 58.1
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 9.3e-92 341.3 388 53.9
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 4.6e-91 339.0 367 54.5
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.3e-90 337.4 305 63.0
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.8e-90 337.0 379 54.4
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.1e-89 334.3 361 56.5
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 3.3e-89 332.8 374 53.7
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 3.7e-88 329.3 379 54.4
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 4.8e-88 328.9 310 60.3
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 6.3e-88 328.6 307 61.2
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.8e-87 327.0 292 63.7
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.8e-87 327.0 297 60.9
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.4e-87 326.6 337 57.6
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 5.3e-87 325.5 379 52.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 9.0e-87 324.7 410 50.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 1.2e-86 324.3 334 55.7
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.5e-86 323.9 298 61.7
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.5e-86 323.9 298 61.7
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 3.4e-86 322.8 302 60.3
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 5.9e-86 322.0 311 59.8
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.2e-85 320.1 359 53.8
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 5.0e-85 318.9 327 57.8
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 5.0e-85 318.9 289 62.6
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 6.5e-85 318.5 305 59.0
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 8.5e-85 318.2 332 55.1
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.2e-84 316.2 372 52.4
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 3.2e-84 316.2 333 56.5
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 5.5e-84 315.5 372 52.2
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 7.2e-84 315.1 391 50.9
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 9.4e-84 314.7 360 53.6
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.2e-83 314.3 355 54.6
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.2e-83 314.3 391 50.9
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.6e-83 313.9 290 63.4
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 2.1e-83 313.5 328 56.1
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 2.1e-83 313.5 313 57.5
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.6e-83 312.8 282 63.5
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 4.6e-83 312.4 304 58.6
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 6.1e-83 312.0 391 50.1
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 7.9e-83 311.6 391 50.1
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 7.9e-83 311.6 282 62.4
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.4e-82 310.8 283 61.8
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.8e-82 310.5 401 51.1
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.3e-82 310.1 329 55.3
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 2.3e-82 310.1 329 55.3
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 2.3e-82 310.1 329 55.3
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 2.3e-82 310.1 376 52.7
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 3.0e-82 309.7 305 58.4
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 3.9e-82 309.3 329 56.5
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 3.9e-82 309.3 329 55.6
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 5.1e-82 308.9 329 56.2
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 6.7e-82 308.5 305 58.0
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.7e-82 308.5 268 64.2
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-81 307.8 356 53.7
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.1e-81 307.8 356 53.7
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.1e-81 307.8 269 63.9
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.1e-81 307.8 375 52.8
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.1e-81 307.8 362 53.3
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.5e-81 307.4 356 53.1
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.5e-81 307.4 305 58.0
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 2.0e-81 307.0 332 56.3
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 2.5e-81 306.6 312 59.9
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 3.3e-81 306.2 307 57.7
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.3e-81 306.2 302 58.9
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 7.4e-81 305.1 329 56.5
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 7.4e-81 305.1 337 54.0
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.8e-80 303.1 336 55.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.8e-80 303.1 291 57.7
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 2.8e-80 303.1 324 55.6
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.8e-80 303.1 409 48.7
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.8e-80 302.4 343 55.1
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 4.8e-80 302.4 332 55.4
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 4.8e-80 302.4 302 60.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.1e-79 301.2 374 51.1
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.4e-79 300.8 390 50.8
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.4e-79 300.1 304 55.9
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 3.1e-79 299.7 352 53.4
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.2e-78 297.7 281 59.1
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 4.5e-78 295.8 322 53.1
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 5.9e-78 295.4 359 52.9
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.0e-77 294.7 321 54.2
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.0e-77 294.7 287 57.8
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 1.3e-77 294.3 303 55.4
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 1.3e-77 294.3 306 55.2
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.2e-77 293.5 314 53.2
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 8.5e-77 291.6 334 52.7
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.4e-76 290.8 288 58.3
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.2e-76 289.3 382 48.7
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 3.0e-74 283.1 336 50.6
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.7e-74 282.0 299 56.5
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 8.8e-74 281.6 253 60.9
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 8.8e-74 281.6 269 56.1
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.1e-73 281.2 293 57.3
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 2.6e-73 280.0 338 52.4
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 7.4e-73 278.5 295 57.3
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 9.7e-73 278.1 303 55.4
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.8e-72 276.6 354 48.0
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.1e-71 273.1 281 56.9
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.2e-70 271.2 297 54.2
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.6e-70 270.0 332 50.3
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.9e-68 263.8 252 57.1
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.5e-68 263.5 314 51.9
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 8.0e-67 258.5 378 47.6
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.1e-65 254.6 324 48.8
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.2e-64 250.4 270 53.7
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.8e-63 247.3 307 50.8
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 7.0e-63 245.4 331 50.2
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 9.4e-60 235.0 250 55.6
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 9.8e-57 224.9 181 68.5
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.3e-56 224.6 292 45.5
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.2e-54 218.0 298 45.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.2e-54 218.0 298 45.3
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.0e-53 214.9 265 44.9
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.1e-52 211.5 265 50.9
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.1e-51 207.2 264 44.7
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 7.5e-49 198.7 286 43.7
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 5.9e-46 189.1 184 54.9
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.0e-38 164.1 125 62.4
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 3.3e-36 156.8 233 42.9
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 2.2e-32 144.1 217 41.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 4.6e-30 136.3 77 85.7
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.0e-29 135.2 161 47.2
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 3.1e-26 123.6 163 39.3
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 9.2e-23 112.1 160 36.9
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 6.0e-22 109.4 285 30.5
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.1e-20 105.1 162 33.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 9.6e-12 75.5 75 60.0
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.4e-09 67.0 67 58.2
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 2.2e-08 64.3 35 88.6
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.2e-06 58.5 100 39.0


User provided reference genes

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