Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-144 516.5 255 100.0
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.2e-139 498.4 258 96.1
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-108 396.4 200 98.5
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.5e-107 391.3 200 97.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.6e-106 388.7 200 96.5
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 6.7e-105 384.4 207 93.7
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.7e-92 343.2 201 85.6
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.7e-68 263.5 201 68.2
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 9.5e-67 257.7 201 67.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.2e-66 257.3 198 65.7
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.2e-62 242.7 200 63.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.0e-61 240.0 200 62.5
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.0e-61 240.0 200 63.5
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.5e-61 239.2 200 62.0
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.5e-61 239.2 201 61.7
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.3e-60 237.3 206 61.2
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.3e-60 236.5 202 63.9
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.0e-60 236.1 207 63.8
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 5.0e-60 235.3 198 62.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.1e-59 234.2 201 62.7
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 7.3e-59 231.5 204 64.2
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 7.3e-59 231.5 198 61.1
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 2.1e-58 229.9 206 59.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 3.6e-58 229.2 202 59.9
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.1e-57 227.6 198 60.1
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.1e-57 226.1 203 59.1
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.0e-57 225.7 202 58.9
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 5.2e-57 225.3 205 59.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.8e-57 224.9 204 59.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.5e-56 223.8 202 59.9
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 3.4e-56 222.6 205 59.5
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.4e-56 222.6 202 59.9
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.4e-56 222.6 187 62.6
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.4e-56 222.6 208 58.7
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.4e-56 222.2 206 60.2
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 7.5e-56 221.5 205 56.6
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 9.8e-56 221.1 201 58.2
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 2.2e-55 219.9 198 58.1
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.2e-53 214.2 201 58.7
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.1e-53 213.4 205 57.1
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 3.5e-53 212.6 202 56.9
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 6.0e-53 211.8 201 55.2
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.8e-53 211.5 206 57.3
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.0e-52 211.1 204 58.8
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-52 210.3 200 57.0
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-52 210.3 200 57.0
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.7e-52 210.3 197 57.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.3e-52 209.9 202 55.0
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 3.9e-52 209.1 200 55.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.1e-52 208.8 200 59.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 5.1e-52 208.8 204 60.3
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 6.6e-52 208.4 205 55.6
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 6.6e-52 208.4 196 56.1
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 8.6e-52 208.0 202 57.4
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 8.6e-52 208.0 202 57.4
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 3.3e-51 206.1 205 56.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 3.3e-51 206.1 205 56.1
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 4.3e-51 205.7 217 55.8
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 5.6e-51 205.3 202 56.9
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 5.6e-51 205.3 202 55.0
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.3e-51 204.9 201 55.7
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 9.5e-51 204.5 205 57.1
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 9.5e-51 204.5 201 55.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 9.5e-51 204.5 200 56.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.6e-50 203.8 205 57.1
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.6e-50 203.8 203 54.2
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.6e-50 202.6 206 54.9
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 3.6e-50 202.6 207 56.0
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 4.7e-50 202.2 200 53.5
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 4.7e-50 202.2 201 55.7
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 8.1e-50 201.4 206 53.4
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 8.1e-50 201.4 206 53.4
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.4e-49 200.7 203 52.7
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.3e-49 199.9 200 54.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 2.3e-49 199.9 201 53.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.1e-49 199.5 202 57.4
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.1e-49 199.5 202 57.4
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.2e-49 198.7 202 54.5
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 5.2e-49 198.7 200 53.5
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.2e-49 198.7 202 53.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 8.9e-49 198.0 203 51.2
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.2e-48 197.6 207 52.2
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.0e-48 196.8 200 53.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.4e-48 196.1 199 52.8
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.4e-48 195.7 197 52.8
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 5.8e-48 195.3 205 52.2
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.9e-47 193.0 220 52.3
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.7e-47 192.6 200 51.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 3.7e-47 192.6 200 52.5
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 4.9e-47 192.2 204 51.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 6.4e-47 191.8 202 56.4
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.1e-46 191.0 199 52.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-46 191.0 200 50.5
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.4e-46 190.7 202 53.5
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 2.4e-46 189.9 207 49.8
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 2.4e-46 189.9 207 49.8
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.2e-46 189.5 205 51.7
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 3.2e-46 189.5 200 51.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 7.1e-46 188.3 203 51.7
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.1e-46 188.3 200 52.0
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.2e-45 187.6 207 50.2
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.6e-45 187.2 235 47.2
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.1e-45 186.8 205 55.1
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 3.5e-45 186.0 203 49.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 3.5e-45 186.0 203 49.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 3.5e-45 186.0 203 49.8
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 3.5e-45 186.0 213 46.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.6e-45 185.7 208 52.9
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 6.0e-45 185.3 205 50.7
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.8e-45 184.9 201 55.2
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.7e-44 183.7 154 66.2
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.7e-44 183.7 207 49.8
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.0e-44 183.0 204 50.5
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 3.9e-44 182.6 199 52.3
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.6e-44 181.8 202 52.5
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.9e-43 180.3 212 51.9
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.5e-43 179.9 201 52.2
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 4.3e-43 179.1 271 42.1
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 7.3e-43 178.3 207 49.3
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.6e-42 176.0 263 41.1
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 6.2e-42 175.3 329 38.3
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 8.1e-42 174.9 215 47.0
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.4e-41 174.1 200 47.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.4e-41 173.3 202 48.0
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 5.8e-40 168.7 203 48.3
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 7.6e-40 168.3 232 44.8
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 9.9e-40 167.9 152 60.5
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-39 167.5 121 71.1
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.9e-39 166.4 202 48.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.4e-38 164.1 197 47.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.2e-38 162.5 177 50.8
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.1e-37 160.2 207 46.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.8e-37 158.3 262 42.4
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.3e-36 156.8 201 50.2
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.0e-36 156.4 203 43.8
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 3.9e-36 156.0 198 42.4
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 8.7e-36 154.8 103 72.8
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 5.6e-35 152.1 205 48.3
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.1e-34 150.2 208 45.7
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.8e-34 149.8 203 44.3
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 5.3e-33 145.6 95 70.5
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.0e-32 143.7 121 57.9
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.2e-30 136.0 170 49.4
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.1e-29 133.7 89 69.7
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 2.3e-28 130.2 160 48.8
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 6.6e-28 128.6 157 49.7
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.7e-28 128.3 157 48.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.9e-27 127.1 203 38.9
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.3e-26 124.4 164 48.2
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 3.6e-26 122.9 122 53.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 5.3e-25 119.0 137 48.2
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 9.0e-25 118.2 197 37.6
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 3.4e-24 116.3 153 46.4
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 7.6e-24 115.2 173 42.8
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.7e-23 114.0 164 43.9
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 7.4e-19 98.6 155 42.6
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.6e-18 97.4 155 43.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.0e-15 88.2 87 51.7
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.9e-14 84.0 200 35.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.7e-13 80.1 56 66.1
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.3e-12 77.8 44 81.8
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.3e-12 77.0 84 48.8
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.9e-12 76.3 126 42.1
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.7e-12 75.5 44 77.3
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.7e-12 75.5 44 77.3
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 3.3e-11 73.2 49 65.3
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 5.7e-11 72.4 123 41.5
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.3e-10 71.2 98 43.9
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 5.3e-09 65.9 75 44.0
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 9.3e-06 55.1 104 39.4
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 9.3e-06 55.1 104 39.4


User provided reference genes

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