Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2816 Fragaria x ananassa HOM05D001035 ORTHO05D001045 1.0e-145 520.0 250 100.0
FAN08G1353 Fragaria x ananassa HOM05D001035 ORTHO05D001045 6.7e-142 507.3 250 96.8
FvH4_5g32060 Fragaria vesca HOM05D001035 ORTHO05D001045 3.3e-141 505.0 250 96.8
FAN18G0239 Fragaria x ananassa HOM05D001035 ORTHO05D001045 1.7e-140 502.7 250 96.4
RcHm_v2.0_Chr7g0228111 Rosa chinensis HOM05D001035 ORTHO05D001045 2.5e-136 488.8 250 93.6
Prupe.1G552900 Prunus persica HOM05D001035 ORTHO05D001045 1.9e-128 462.6 249 88.4
MD15G1408200 Malus domestica HOM05D001035 ORTHO05D001045 7.5e-125 450.7 250 84.8
MD08G1219600 Malus domestica HOM05D001035 ORTHO05D001045 3.7e-124 448.4 247 85.8
CiPaw.08G002100 Carya illinoinensis HOM05D001035 ORTHO05D001045 2.0e-109 399.4 247 78.1
Thecc.08G188300 Theobroma cacao HOM05D001035 ORTHO05D001045 9.8e-109 397.1 245 75.9
Dinv41743 Davidia involucrata HOM05D001035 ORTHO05D001045 1.7e-108 396.4 241 76.8
Gohir.A02G087300 Gossypium hirsutum HOM05D001035 ORTHO05D001045 1.4e-107 393.3 243 77.0
GSVIVG01036236001 Vitis vinifera HOM05D001035 ORTHO05D001045 4.1e-107 391.7 245 76.7
Phvul.011G001200 Phaseolus vulgaris HOM05D001035 ORTHO05D001045 5.4e-107 391.3 248 75.4
Gorai.005G115800 Gossypium raimondii HOM05D001035 ORTHO05D001045 2.0e-106 389.4 243 76.5
VMungo1127G0841 Vigna mungo HOM05D001035 ORTHO05D001045 2.7e-106 389.0 244 75.4
Gohir.D02G102100 Gossypium hirsutum HOM05D001035 ORTHO05D001045 6.6e-105 384.4 241 75.9
Potri.019G080300 Populus trichocarpa HOM05D001035 ORTHO05D001045 4.3e-104 381.7 245 74.3
arahy.Tifrunner.gnm1.ann1.LX8XJC Arachis hypogaea HOM05D001035 ORTHO05D001045 9.5e-104 380.6 247 72.1
Lj3g0009046 Lotus japonicus HOM05D001035 ORTHO05D001045 3.6e-103 378.6 247 72.9
Sabra13G0093300 Salix brachista HOM05D001035 ORTHO05D001045 3.6e-103 378.6 245 72.7
arahy.Tifrunner.gnm1.ann1.V13CJX Arachis hypogaea HOM05D001035 ORTHO05D001045 6.2e-103 377.9 247 71.3
Ciclev10000204m.g Citrus clementina HOM05D001035 ORTHO05D001045 8.1e-103 377.5 245 72.7
Nn3g18383 Nelumbo nucifera HOM05D001035 ORTHO05D001045 2.3e-102 375.9 241 74.3
Cpa.g.sc66.12 Carica papaya HOM05D001035 ORTHO05D001045 5.2e-102 374.8 242 73.1
Ca_19705_v3 Cicer arietinum L. HOM05D001035 ORTHO05D001045 1.2e-101 373.6 248 71.8
Glyma.12G001200 Glycine max HOM05D001035 ORTHO05D001045 2.0e-101 372.9 248 72.2
Glyma.08G238800 Glycine max HOM05D001035 ORTHO05D001045 2.6e-101 372.5 248 71.8
Sabra19G0091500 Salix brachista HOM05D001035 ORTHO05D001045 9.8e-101 370.5 245 71.8
Sed0015270 Sechium edule HOM05D001035 ORTHO05D001045 9.8e-101 370.5 247 70.4
TAR381G0676 Trochodendron aralioides HOM05D001035 ORTHO05D001045 9.8e-101 370.5 241 73.9
MELO3C008069.2 Cucumis melo HOM05D001035 ORTHO05D001045 2.9e-100 369.0 247 70.9
Potri.013G107950 Populus trichocarpa HOM05D001035 ORTHO05D001045 3.7e-100 368.6 246 72.0
Lalb_Chr01g0000111 Lupinus albus HOM05D001035 ORTHO05D001045 4.9e-100 368.2 243 71.2
Haze_21290 Corylus avellana HOM05D001035 ORTHO05D001045 8.3e-100 367.5 283 66.4
Psat7g225680 Pisum sativum HOM05D001035 ORTHO05D001045 1.9e-99 366.3 248 70.2
CsaV3_2G033000 Cucumis sativus L. HOM05D001035 ORTHO05D001045 2.4e-99 365.9 247 70.4
Medtr4g032925 Medicago truncatula HOM05D001035 ORTHO05D001045 4.1e-99 365.2 248 69.8
Medtr4g032935 Medicago truncatula HOM05D001035 ORTHO05D001045 4.1e-99 365.2 248 69.8
Atru.chr13.2382 Acer truncatum HOM05D001035 ORTHO05D001045 7.1e-99 364.4 245 71.0
CSS0040615 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D001045 4.6e-98 361.7 244 73.0
TPR.G34169 Trifolium pratense HOM05D001035 ORTHO05D001045 4.3e-96 355.1 248 67.7
CANSAT01G0217 Cannabis sativa HOM05D001035 ORTHO05D001045 2.1e-95 352.8 247 68.4
Peaxi162Scf00391g00737 Petunia axillaris HOM05D001035 ORTHO05D001045 1.8e-94 349.7 240 67.1
Eucgr.F03001 Eucalyptus grandis HOM05D001035 ORTHO05D001045 3.1e-94 349.0 242 69.8
PGR042G2161 Punica granatum HOM05D001035 ORTHO05D001045 3.1e-94 349.0 239 70.3
Lj3A34G36 Lonicera japonica HOM05D001035 ORTHO05D001045 6.8e-94 347.8 244 67.6
Aqoxy5G03463 Aquilegia oxysepala HOM05D001035 ORTHO05D001045 3.4e-93 345.5 244 69.3
Nitab4.5_0002013g0020 Nicotiana tabacum HOM05D001035 ORTHO05D001045 5.8e-93 344.7 244 66.0
MBI03_g13494_MAGBIO Magnolia biondii HOM05D001035 ORTHO05D001045 1.7e-92 343.2 239 71.5
Oeu013894.4 Olea europaea HOM05D001035 ORTHO05D001045 2.2e-92 342.8 241 68.9
Manes.02G196600 Manihot esculenta HOM05D001035 ORTHO05D001045 1.4e-91 340.1 214 75.7
Nitab4.5_0003211g0030 Nicotiana tabacum HOM05D001035 ORTHO05D001045 1.9e-91 339.7 244 64.8
Cc10_g10150 Coffea canephora HOM05D001035 ORTHO05D001045 4.1e-91 338.6 247 67.2
Sopen11g011250 Solanum pennellii HOM05D001035 ORTHO05D001045 1.2e-90 337.0 242 65.3
Rhsim11G0054800 Rhododendron simsii HOM05D001035 ORTHO05D001045 1.3e-89 333.6 222 73.4
Actinidia18883 Actinidia chinensis HOM05D001035 ORTHO05D001045 3.0e-89 332.4 222 73.0
AUR62022644 Chenopodium quinoa HOM05D001035 ORTHO05D001045 6.6e-89 331.3 242 66.1
AUR62004617 Chenopodium quinoa HOM05D001035 ORTHO05D001045 3.3e-88 328.9 242 65.3
DCAR_011522 Daucus carota HOM05D001035 ORTHO05D001045 5.6e-88 328.2 247 65.2
BcaB03g11914 Brassica carinata HOM05D001035 ORTHO05D001045 7.3e-88 327.8 244 63.9
EL10Ac1g00120 Beta vulgaris HOM05D001035 ORTHO05D001045 1.2e-87 327.0 242 65.7
TWI14G1389 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 1.6e-87 326.6 241 65.6
Migut.C01305 Erythranthe guttata HOM05D001035 ORTHO05D001045 3.6e-87 325.5 243 65.0
Sp1g20120 Schrenkiella parvula HOM05D001035 ORTHO05D001045 4.7e-87 325.1 244 63.9
A08p28460 Brassica napus HOM05D001035 ORTHO05D001045 1.1e-86 323.9 244 63.5
BraA08t34775Z Brassica rapa HOM05D001035 ORTHO05D001045 1.1e-86 323.9 244 63.5
BolC8t49800H Brassica oleracea HOM05D001035 ORTHO05D001045 3.1e-86 322.4 244 63.5
BcaB07g32272 Brassica carinata HOM05D001035 ORTHO05D001045 8.9e-86 320.9 244 62.7
Actinidia35139 Actinidia chinensis HOM05D001035 ORTHO05D001045 1.2e-85 320.5 221 70.6
A07p14280 Brassica napus HOM05D001035 ORTHO05D001045 1.2e-85 320.5 245 63.3
BraA07t29185Z Brassica rapa HOM05D001035 ORTHO05D001045 1.2e-85 320.5 245 63.3
ATR0693G444 Amborella trichopoda HOM05D001035 ORTHO05D001045 1.5e-85 320.1 239 67.8
C07p21000 Brassica napus HOM05D001035 ORTHO05D001045 1.5e-85 320.1 245 63.3
Thhalv10006740m.g Eutrema salsugineum HOM05D001035 ORTHO05D001045 2.0e-85 319.7 244 62.7
BcaC06g34979 Brassica carinata HOM05D001035 ORTHO05D001045 3.4e-85 318.9 245 62.9
BolC7t42632H Brassica oleracea HOM05D001035 ORTHO05D001045 3.4e-85 318.9 245 63.3
Aa31LG7G6510 Aethionema arabicum HOM05D001035 ORTHO05D001045 5.8e-85 318.2 244 63.5
AL1G36150 Arabidopsis lyrata HOM05D001035 ORTHO05D001045 1.3e-84 317.0 244 61.5
SalBow7G3463 Salvia bowleyana HOM05D001035 ORTHO05D001045 1.3e-84 317.0 243 62.6
BcaC07g39169 Brassica carinata HOM05D001035 ORTHO05D001045 2.2e-84 316.2 244 63.5
C08p21620 Brassica napus HOM05D001035 ORTHO05D001045 2.2e-84 316.2 244 63.5
ECA247G2775 Erigeron canadensis HOM05D001035 ORTHO05D001045 3.8e-84 315.5 243 60.5
AT1G22620 Arabidopsis thaliana HOM05D001035 ORTHO05D001045 6.4e-84 314.7 244 61.5
Hund27102 Selenicereus undatus HOM05D001035 ORTHO05D001045 6.4e-84 314.7 241 62.2
THA.LOC104810575 Tarenaya hassleriana HOM05D001035 ORTHO05D001045 6.4e-84 314.7 238 64.3
Solyc11g022380.3 Solanum lycopersicum HOM05D001035 ORTHO05D001045 8.4e-84 314.3 242 62.4
Carub.0001s2213 Capsella rubella HOM05D001035 ORTHO05D001045 1.9e-83 313.2 241 61.4
SGA_v2.0_scaffold118G32529 Striga asiatica HOM05D001035 ORTHO05D001045 5.4e-83 311.6 241 62.2
PSO170G4043 Papaver somniferum HOM05D001035 ORTHO05D001045 4.6e-82 308.5 241 62.7
SGA_v2.0_scaffold118G32518 Striga asiatica HOM05D001035 ORTHO05D001045 6.0e-82 308.1 241 61.8
Lsat_1_v5_gn_1_12260 Lactuca sativa HOM05D001035 ORTHO05D001045 1.0e-81 307.4 245 60.4
PSO017G4800 Papaver somniferum HOM05D001035 ORTHO05D001045 3.0e-81 305.8 241 62.2
Ah.05g178430 Amaranthus hybridus HOM05D001035 ORTHO05D001045 6.6e-81 304.7 244 62.3
HanXRQChr02g0044241 Helianthus annuus HOM05D001035 ORTHO05D001045 1.3e-79 300.4 245 59.2
vmacro00749 Vaccinium macrocarpon HOM05D001035 ORTHO05D001045 2.6e-77 292.7 221 67.4
Duzib116G0807 Durio zibethinus HOM05D001035 ORTHO05D001045 3.8e-76 288.9 192 70.3
BolC5t30870H Brassica oleracea HOM05D001035 ORTHO05D001045 2.1e-74 283.1 253 56.9
C05p21760 Brassica napus HOM05D001035 ORTHO05D001045 2.3e-73 279.6 253 56.1
Os08g0109100 Oryza sativa ssp. japonica HOM05D001035 ORTHO05D001045 1.1e-72 277.3 241 58.5
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 1.9e-72 276.6 217 63.6
BcaC05g26190 Brassica carinata HOM05D001035 ORTHO05D001045 1.8e-70 270.0 244 56.6
Sc26g0000520 Simmondsia chinensis HOM05D001035 ORTHO05D001045 1.2e-69 267.3 207 64.7
HPP92_001194 Vanilla planifolia HOM05D001035 ORTHO05D001045 2.2e-68 263.1 243 55.1
SEGI_16379 Sequoiadendron giganteum HOM05D001035 ORTHO05D001045 7.1e-67 258.1 243 53.1
CDE02G2546 Ceratophyllum demersum HOM05D001035 ORTHO05D001045 1.5e-61 240.4 235 56.2
unitig_32.g11184 Utricularia gibba HOM05D001035 ORTHO05D007098 1.9e-59 233.4 251 49.4
CARHR022990 Cardamine hirsuta HOM05D001035 ORTHO05D001045 7.4e-56 221.5 162 66.7
Cfa012766 Carpinus fangiana HOM05D001035 ORTHO05D001045 3.2e-43 179.5 125 72.0
ClCG11G008620 Citrullus lanatus HOM05D001035 ORTHO05D001045 9.4e-43 177.9 131 68.7
Glyma.20G071666 Glycine max HOM05D001035 ORTHO05D001045 1.1e-38 164.5 127 65.4
SabraUnG0004200 Salix brachista HOM05D006426 ORTHO05D007737 2.6e-29 133.3 95 69.5
AUR62041750 Chenopodium quinoa HOM05D003315 ORTHO05D003407 6.5e-28 128.6 159 45.3
ClCG11G008630 Citrullus lanatus HOM05D001035 ORTHO05D023228 1.9e-27 127.1 272 31.2
Pp3c15_20440 Physcomitrium patens HOM05D001035 ORTHO05D001045 7.2e-27 125.2 219 34.2
Pp3c25_8050 Physcomitrium patens HOM05D001035 ORTHO05D001045 1.6e-26 124.0 233 37.8
Pp3c25_8060 Physcomitrium patens HOM05D001035 ORTHO05D001045 1.6e-26 124.0 233 37.8
CSS0012418 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D023228 1.8e-25 120.6 86 68.6
Pp3c15_2850 Physcomitrium patens HOM05D001035 ORTHO05D001045 3.0e-25 119.8 217 34.6
Mapoly0001s0261 Marchantia polymorpha HOM05D001035 ORTHO05D001045 5.2e-25 119.0 239 33.5
Pp3c5_9070 Physcomitrium patens HOM05D001035 ORTHO05D001045 1.5e-24 117.5 212 37.7
BcaB03g14194 Brassica carinata HOM05D001035 ORTHO05D001045 3.3e-24 116.3 104 56.7
A09p42140 Brassica napus HOM05D001035 ORTHO05D001045 2.2e-23 113.6 173 42.8
BraA09t39700Z Brassica rapa HOM05D001035 ORTHO05D001045 8.2e-23 111.7 173 42.2
PGSC0003DMG400009269 Solanum tuberosum HOM05D001035 ORTHO05D023228 3.2e-19 99.8 80 51.2
CSS0025594 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D001045 2.8e-15 86.7 63 63.5
Actinidia13531 Actinidia chinensis HOM05D000088 ORTHO05D023228 3.5e-13 79.7 62 56.5
CAN.G102.4 Capsicum annuum HOM05D001035 ORTHO05D001045 2.3e-12 77.0 61 57.4
AUR62038726 Chenopodium quinoa HOM05D003315 ORTHO05D003407 7.0e-06 55.5 40 57.5
AUR62019789 Chenopodium quinoa HOM05D003315 ORTHO05D003407 9.2e-06 55.1 37 62.2


User provided reference genes

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