Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.5e-133 479.6 243 100.0
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.0e-127 459.1 259 91.5
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.3e-125 451.8 261 91.2
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.6e-122 442.2 262 89.3
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.1e-116 422.5 247 89.5
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 9.0e-91 337.4 245 71.0
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 9.6e-85 317.4 243 71.2
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 6.9e-83 311.2 258 62.8
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 2.0e-82 309.7 250 64.8
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 4.5e-82 308.5 258 62.4
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 5.8e-82 308.1 215 72.6
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 6.4e-81 304.7 247 63.2
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.9e-80 303.1 251 63.3
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 2.5e-80 302.8 214 72.4
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 1.2e-79 300.4 247 64.0
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 3.5e-79 298.9 182 76.9
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.7e-78 294.7 247 62.3
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 8.7e-78 294.3 178 78.7
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.1e-77 293.9 250 62.0
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.9e-77 293.1 247 61.9
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 3.3e-77 292.4 264 63.6
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 4.3e-77 292.0 178 77.5
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.3e-76 290.4 176 78.4
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 1.3e-76 290.4 184 75.5
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.6e-76 290.0 259 62.2
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.6e-76 290.0 219 66.2
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 8.2e-76 287.7 179 77.1
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.1e-75 287.3 254 61.0
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 3.1e-75 285.8 176 77.8
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 9.0e-75 284.3 195 72.3
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 4.5e-74 282.0 190 73.7
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 4.5e-74 282.0 209 68.4
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 2.2e-73 279.6 196 69.4
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 3.8e-73 278.9 196 68.4
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.5e-73 278.1 187 72.2
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 6.5e-73 278.1 179 76.0
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.1e-72 277.3 246 61.4
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 1.9e-72 276.6 181 75.1
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 2.5e-72 276.2 228 64.9
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 5.5e-72 275.0 170 77.1
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 1.2e-71 273.9 233 62.7
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 1.2e-71 273.9 236 61.9
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.6e-71 273.5 226 63.7
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 3.5e-71 272.3 230 62.2
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 3.5e-71 272.3 162 79.6
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 3.5e-71 272.3 194 68.0
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 3.5e-71 272.3 175 74.9
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 4.6e-71 271.9 183 69.4
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 6.1e-71 271.6 192 68.2
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 7.9e-71 271.2 247 59.5
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.3e-70 269.6 187 69.5
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 3.9e-70 268.9 200 66.5
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 5.1e-70 268.5 193 69.4
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 6.7e-70 268.1 193 68.9
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 8.7e-70 267.7 243 59.7
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 8.7e-70 267.7 193 68.9
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 8.7e-70 267.7 191 68.1
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.1e-69 267.3 232 60.3
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.1e-69 267.3 180 68.3
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.5e-69 266.9 180 72.2
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.9e-69 266.5 178 70.8
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.5e-69 266.2 180 67.8
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 3.3e-69 265.8 227 60.4
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 5.7e-69 265.0 180 68.3
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 7.4e-69 264.6 183 68.3
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 7.4e-69 264.6 191 66.0
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 9.7e-69 264.2 167 74.9
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.3e-68 263.8 146 95.9
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.2e-68 263.1 210 62.9
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 3.7e-68 262.3 183 69.4
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 4.8e-68 261.9 179 72.1
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 6.3e-68 261.5 181 68.0
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 6.3e-68 261.5 169 75.7
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 8.2e-68 261.2 191 67.5
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.1e-67 260.8 182 68.7
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 1.1e-67 260.8 228 59.2
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 3.1e-67 259.2 181 68.5
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 3.1e-67 259.2 181 68.5
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 3.1e-67 259.2 192 66.7
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 4.1e-67 258.8 183 69.4
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 6.9e-67 258.1 178 67.4
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 1.2e-66 257.3 178 67.4
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.0e-66 256.5 245 54.7
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 2.0e-66 256.5 181 65.7
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 3.4e-66 255.8 183 66.7
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 4.5e-66 255.4 181 67.4
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 7.7e-66 254.6 178 66.9
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.0e-65 254.2 213 61.0
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 1.7e-65 253.4 183 66.1
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-65 253.1 181 66.3
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 2.2e-65 253.1 181 66.3
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 2.2e-65 253.1 181 66.3
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 6.5e-65 251.5 244 54.9
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 2.5e-64 249.6 183 66.7
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 5.5e-64 248.4 178 65.7
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 4.6e-63 245.4 178 65.2
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.8e-62 243.4 170 67.1
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 5.1e-62 241.9 168 67.9
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 8.8e-62 241.1 165 69.1
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 8.8e-62 241.1 217 54.8
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 2.0e-61 240.0 167 67.7
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 2.5e-61 239.6 167 66.5
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 3.3e-61 239.2 269 51.3
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.7e-61 237.7 144 79.2
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.4e-59 233.8 148 76.4
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 1.8e-59 233.4 154 73.4
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.2e-58 230.7 231 57.6
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 6.5e-57 224.9 176 59.7
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 2.7e-55 219.5 139 77.0
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 1.8e-54 216.9 200 58.0
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 4.4e-53 212.2 211 54.5
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.8e-52 209.5 222 50.9
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 8.5e-49 198.0 130 73.8
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-48 197.6 146 67.1
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.1e-47 193.4 172 55.8
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.3e-46 189.9 128 69.5
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 8.8e-46 188.0 127 70.1
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 5.7e-45 185.3 190 51.6
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 3.7e-44 182.6 194 51.5
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 3.7e-44 182.6 159 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.4e-43 180.6 172 51.2
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 2.4e-43 179.9 145 58.6
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 7.2e-40 168.3 211 49.3
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 2.1e-39 166.8 95 84.2
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.6e-34 150.6 109 67.9
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 3.8e-33 146.0 82 82.9
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 1.2e-29 134.4 152 52.6
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 9.5e-24 114.8 94 61.7
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 2.4e-19 100.1 185 37.3
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 2.3e-14 83.6 152 30.3
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 8.3e-12 75.1 50 66.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 3.2e-11 73.2 114 42.1
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 2.7e-10 70.1 129 27.9
Cfa005086 Carpinus fangiana HOM05D005796 ORTHO05D007054 1.1e-08 64.7 149 38.9
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 1.6e-07 60.8 133 28.6
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 6.2e-07 58.9 36 63.9


User provided reference genes

Program Settings