Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 4.3e-53 211.1 108 100.0
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.1e-39 165.6 102 83.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 3.5e-39 164.9 102 83.3
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.5e-39 164.9 102 83.3
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.5e-39 164.9 102 83.3
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 9.7e-37 156.8 102 79.4
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.7e-37 156.8 102 79.4
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 3.1e-35 151.8 101 73.3
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 5.9e-34 147.5 100 74.0
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 7.6e-34 147.1 101 71.3
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 3.8e-33 144.8 100 71.0
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 5.0e-33 144.4 100 72.0
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 5.0e-33 144.4 102 71.6
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 6.5e-33 144.1 102 70.6
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 6.5e-33 144.1 105 69.5
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.1e-32 143.3 100 71.0
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 1.4e-32 142.9 100 70.0
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.4e-32 142.9 100 72.0
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.4e-32 142.9 100 71.0
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 1.9e-32 142.5 100 71.0
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.9e-32 142.5 100 69.0
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.9e-32 142.5 100 71.0
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.2e-32 141.7 100 70.0
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 3.2e-32 141.7 105 67.6
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 3.2e-32 141.7 105 67.6
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.2e-32 141.7 100 70.0
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 4.2e-32 141.4 100 70.0
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 4.2e-32 141.4 100 72.0
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 4.2e-32 141.4 105 67.6
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 7.2e-32 140.6 100 72.0
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 7.2e-32 140.6 100 69.0
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 7.2e-32 140.6 100 72.0
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 9.3e-32 140.2 100 69.0
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 9.3e-32 140.2 100 69.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 9.3e-32 140.2 117 66.7
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.2e-31 139.8 102 67.6
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.2e-31 139.8 100 72.0
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.2e-31 139.8 100 68.0
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.2e-31 139.8 100 69.0
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 1.2e-31 139.8 100 68.0
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.2e-31 139.8 100 68.0
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.6e-31 139.4 105 64.8
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 1.6e-31 139.4 102 67.6
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-31 139.4 102 67.6
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.6e-31 139.4 100 66.0
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 1.6e-31 139.4 100 70.0
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 1.6e-31 139.4 102 65.7
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.1e-31 139.0 105 65.7
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 2.1e-31 139.0 100 70.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 2.7e-31 138.7 100 67.0
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 2.7e-31 138.7 100 67.0
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 2.7e-31 138.7 100 71.0
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.7e-31 138.7 105 65.7
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 2.7e-31 138.7 105 65.7
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 2.7e-31 138.7 105 65.7
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 2.7e-31 138.7 105 65.7
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.7e-31 138.7 100 69.0
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 4.6e-31 137.9 100 69.0
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 4.6e-31 137.9 105 64.8
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 4.6e-31 137.9 105 64.8
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 4.6e-31 137.9 100 68.0
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.6e-31 137.9 100 67.0
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 6.1e-31 137.5 99 67.7
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 6.1e-31 137.5 99 68.7
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 6.1e-31 137.5 105 64.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 6.1e-31 137.5 102 66.7
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 7.9e-31 137.1 105 66.7
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 7.9e-31 137.1 105 65.7
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.0e-30 136.7 99 67.7
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.4e-30 136.3 105 64.8
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.4e-30 136.3 105 64.8
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.4e-30 136.3 105 66.7
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.4e-30 136.3 105 66.7
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.4e-30 136.3 99 67.7
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.4e-30 136.3 103 65.0
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.4e-30 136.3 100 66.0
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.4e-30 136.3 102 65.7
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.8e-30 136.0 105 66.7
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.8e-30 136.0 105 66.7
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.8e-30 136.0 100 66.0
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.8e-30 136.0 105 63.8
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 1.8e-30 136.0 99 64.6
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 2.3e-30 135.6 95 70.5
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 68.0
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 69.0
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 69.0
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 69.0
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 69.0
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 2.3e-30 135.6 70 95.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 68.0
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 68.0
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 68.0
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 2.3e-30 135.6 100 66.0
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 3.0e-30 135.2 103 64.1
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 3.0e-30 135.2 102 65.7
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 3.9e-30 134.8 100 65.0
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 5.1e-30 134.4 105 63.8
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 6.7e-30 134.0 104 65.4
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.8e-30 133.7 105 65.7
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 8.8e-30 133.7 105 63.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 8.8e-30 133.7 99 66.7
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 8.8e-30 133.7 105 64.8
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 8.8e-30 133.7 100 66.0
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.1e-29 133.3 100 69.0
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-29 133.3 100 67.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.5e-29 132.9 105 63.8
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.5e-29 132.9 105 62.9
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 2.5e-29 132.1 101 68.3
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 2.5e-29 132.1 100 66.0
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 3.3e-29 131.7 89 73.0
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 3.3e-29 131.7 100 64.0
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 3.3e-29 131.7 107 62.6
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 3.3e-29 131.7 99 63.6
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 4.3e-29 131.3 100 65.0
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 4.3e-29 131.3 99 65.7
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 5.7e-29 131.0 100 64.0
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 5.7e-29 131.0 100 66.0
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 7.4e-29 130.6 129 53.5
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 7.4e-29 130.6 100 67.0
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.3e-28 129.8 100 66.0
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 3.7e-28 128.3 100 62.0
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.7e-28 128.3 101 66.3
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 1.4e-27 126.3 100 63.0
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.8e-27 125.9 105 60.0
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.1e-27 125.2 100 64.0
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 3.1e-27 125.2 99 61.6
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 5.3e-27 124.4 99 61.6
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 6.9e-27 124.0 104 60.6
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 2.0e-26 122.5 99 60.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 2.6e-26 122.1 100 59.0
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 1.3e-25 119.8 96 65.6
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.3e-25 119.8 102 59.8
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 2.2e-25 119.0 96 60.4
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 8.5e-25 117.1 100 59.0
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 5.5e-24 114.4 100 62.0
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 7.2e-24 114.0 100 54.0
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 9.4e-24 113.6 101 51.5
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.6e-23 112.8 102 53.9
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 4.7e-23 111.3 100 56.0
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 7.9e-23 110.5 105 50.5
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 1.8e-22 109.4 74 75.7
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 3.9e-22 108.2 105 54.3
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 5.1e-22 107.8 98 56.1
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 8.8e-22 107.1 99 57.6
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.5e-21 106.3 105 52.4
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 7.4e-21 104.0 105 51.4
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.2e-20 102.4 74 67.6
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.2e-20 102.4 74 67.6
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 4.8e-20 101.3 73 67.1
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 8.2e-20 100.5 100 46.0
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 8.2e-20 100.5 88 60.2
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 3.1e-19 98.6 99 51.5
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 9.1e-19 97.1 101 44.6
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 7.2e-16 87.4 60 70.0
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 4.7e-15 84.7 73 58.9
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.3e-14 82.4 49 87.8
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.8e-11 72.8 45 75.6
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 7.7e-10 67.4 92 41.3


User provided reference genes

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