Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.2e-161 573.2 291 100.0
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 1.3e-157 559.7 291 97.9
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.3e-156 554.7 291 97.3
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 9.0e-146 520.4 291 89.7
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.0e-120 437.2 293 74.1
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.5e-116 423.3 281 74.7
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 9.7e-116 420.6 291 72.9
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.3e-104 383.6 279 66.7
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 6.1e-102 374.8 284 66.5
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 6.7e-101 371.3 280 65.0
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 5.7e-100 368.2 284 64.8
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.2e-99 366.3 187 97.9
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.1e-98 364.0 287 63.1
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 6.5e-96 354.8 274 63.1
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 8.5e-96 354.4 278 64.0
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.1e-95 354.0 274 63.9
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.9e-95 353.2 274 63.9
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.2e-95 352.1 285 59.6
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 4.2e-95 352.1 274 63.1
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.6e-94 350.1 285 60.0
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 3.6e-94 349.0 288 60.8
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 6.1e-94 348.2 285 60.4
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.8e-93 346.7 283 59.4
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 2.3e-93 346.3 285 58.9
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.9e-93 345.5 280 62.9
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 5.2e-93 345.1 288 60.1
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 5.7e-92 341.7 276 61.6
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.3e-91 340.5 276 61.2
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 2.4e-90 336.3 288 57.6
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-89 334.0 307 54.4
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.2e-89 334.0 307 54.4
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 1.6e-89 333.6 281 58.7
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 2.6e-89 332.8 277 61.0
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 2.2e-88 329.7 284 57.4
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 8.5e-88 327.8 285 57.2
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.1e-87 327.4 262 61.8
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 1.1e-87 327.4 274 58.8
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 5.5e-87 325.1 274 59.1
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 1.2e-86 323.9 284 57.0
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 2.7e-86 322.8 277 57.0
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.6e-86 322.4 285 56.1
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.0e-85 320.9 279 57.3
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 1.4e-85 320.5 278 56.8
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 8.8e-85 317.8 229 66.8
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.2e-84 317.4 278 57.6
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 2.6e-84 316.2 274 56.9
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 4.4e-84 315.5 274 56.9
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 1.7e-83 313.5 278 54.3
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 1.7e-83 313.5 278 54.3
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 1.7e-83 313.5 282 53.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 3.7e-83 312.4 278 55.8
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 6.3e-83 311.6 278 56.5
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.1e-82 310.8 229 61.6
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 1.8e-82 310.1 282 54.6
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 5.3e-82 308.5 282 55.7
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 2.0e-81 306.6 254 59.4
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 2.7e-81 306.2 215 69.8
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 8.5e-80 301.2 279 55.6
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.1e-79 300.8 357 47.1
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.1e-79 300.8 260 58.8
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 1.5e-79 300.4 280 53.2
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 5.5e-79 298.5 278 55.0
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 3.6e-78 295.8 276 55.1
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.6e-78 295.8 258 57.8
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 2.3e-77 293.1 281 54.4
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 5.2e-77 292.0 277 52.3
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 2.0e-73 280.0 262 53.8
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 2.0e-73 280.0 259 55.2
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 1.3e-72 277.3 278 52.9
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 3.8e-72 275.8 278 50.4
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.5e-71 273.9 280 50.7
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 4.2e-71 272.3 248 55.6
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 5.5e-71 271.9 276 49.6
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 5.5e-71 271.9 276 49.3
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 1.6e-70 270.4 278 49.6
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 2.8e-70 269.6 282 51.4
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 2.8e-70 269.6 278 49.3
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 3.6e-70 269.2 277 48.7
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 1.4e-69 267.3 274 48.2
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.8e-69 266.9 277 47.7
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 4.0e-69 265.8 279 46.6
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 4.0e-69 265.8 260 52.3
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 5.2e-69 265.4 288 46.9
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 3.4e-68 262.7 289 47.4
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 9.8e-68 261.2 275 49.1
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 2.2e-67 260.0 289 48.8
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 6.3e-67 258.5 290 47.2
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 6.3e-67 258.5 286 46.2
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 6.3e-67 258.5 286 46.2
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 6.3e-67 258.5 290 47.2
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 1.4e-66 257.3 317 44.2
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.7e-65 253.1 290 46.6
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 4.5e-65 252.3 182 66.5
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 5.0e-64 248.8 183 64.5
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 8.6e-64 248.1 190 64.7
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.9e-63 246.9 217 56.2
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 7.3e-63 245.0 284 47.9
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 7.3e-63 245.0 283 48.1
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 2.8e-62 243.0 215 58.6
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 2.3e-61 240.0 372 38.4
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 1.2e-60 237.7 180 65.0
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.5e-60 237.3 247 51.0
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 4.4e-60 235.7 300 43.7
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 4.4e-60 235.7 207 54.6
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 5.4e-58 228.8 275 45.1
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.3e-56 224.2 265 44.9
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.0e-56 223.0 231 48.9
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 5.0e-56 222.2 174 63.2
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 4.0e-53 212.6 276 44.2
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 5.8e-52 208.8 175 54.3
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 8.3e-51 204.9 187 54.0
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 3.9e-48 196.1 276 41.3
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 2.1e-46 190.3 239 43.1
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 3.1e-45 186.4 275 40.7
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 6.4e-43 178.7 183 49.7
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 1.1e-42 177.9 182 49.5
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 5.8e-36 155.6 141 57.4
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 2.3e-32 143.7 185 39.5
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 5.6e-31 139.0 83 72.3
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.1e-25 120.6 221 35.7
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.6e-22 110.9 112 51.8
FAN04G1739 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.5e-20 104.4 59 96.6
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 2.6e-20 103.6 283 29.7
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.9e-18 97.4 143 44.1
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.4e-13 81.3 109 33.9
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.6e-12 77.0 44 77.3
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 4.5e-12 76.3 99 40.4
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 4.9e-11 72.8 41 70.7
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 2.5e-10 70.5 172 29.7
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 9.3e-10 68.6 50 56.0


User provided reference genes

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