Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 2278.4 1132 100.0
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 2253.4 1135 98.6
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 2223.0 1135 97.6
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 2162.9 1139 94.9
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 2011.5 1137 88.0
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1900.2 1140 83.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1898.6 1132 83.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1896.7 1138 83.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1894.4 1140 83.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1881.7 1147 82.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1880.9 1136 82.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1880.5 1140 82.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1879.0 1140 83.0
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1865.1 1140 82.5
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1864.4 1140 81.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1862.4 1140 81.7
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1860.1 1140 81.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1856.6 1140 81.3
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1854.0 1139 81.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1853.6 1140 81.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1853.2 1139 81.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1850.9 1139 81.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1850.1 1110 83.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1848.9 1140 81.1
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1848.2 1051 87.7
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1847.8 1138 81.1
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1845.1 1135 82.1
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1843.9 1140 81.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1843.6 1140 79.8
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1837.4 1141 80.6
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1835.8 1137 80.8
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1835.1 1137 80.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1830.1 1139 80.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1825.4 1140 80.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1823.1 1199 77.3
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1822.4 1140 80.3
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1821.2 1133 80.0
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1820.8 1142 80.4
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1818.5 1140 80.2
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1808.1 1141 79.5
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1806.2 1141 79.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1147 78.3
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1798.1 1147 77.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1796.9 1166 77.8
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1796.2 1145 78.3
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1135 80.0
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1790.0 1138 78.1
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1780.0 1141 77.8
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1779.6 1142 77.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1778.5 1135 77.6
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1136 77.4
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1768.4 1139 78.2
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1766.9 1092 81.7
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1765.7 1140 78.6
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1763.8 1132 77.5
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1763.4 1140 78.4
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1758.8 1143 76.6
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1756.1 1139 76.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1754.6 1090 80.6
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1750.7 1143 75.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1747.6 1177 75.1
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1740.7 1214 73.1
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1738.4 1203 73.2
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1729.5 1137 76.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1724.9 1141 75.8
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1712.2 1262 71.4
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1711.4 1134 75.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1704.9 1136 74.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1702.2 1136 74.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1701.0 1094 77.7
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1692.6 1136 74.3
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1691.4 1136 74.3
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1689.1 1141 74.4
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1683.7 1140 76.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1681.0 1130 73.9
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1679.8 1132 74.3
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1675.2 1331 67.5
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1132 74.5
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1668.3 1134 73.9
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1667.1 1134 73.8
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1661.4 1162 74.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1652.5 1134 73.5
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1652.1 1134 73.5
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1632.1 1136 72.5
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1613.6 1169 70.7
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1602.0 1178 71.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1597.8 965 82.6
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1569.7 1157 68.9
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1552.7 1132 70.4
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1534.2 1134 68.5
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1531.5 778 97.0
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1511.9 1133 67.9
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1509.6 1133 67.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1497.3 1180 67.1
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1486.1 1120 68.8
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1453.3 883 81.1
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1451.0 847 85.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1445.3 843 85.5
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1437.9 991 74.7
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1386.3 873 77.9
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1279.6 1142 60.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1229.9 834 72.2
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1198.3 701 85.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1120.1 1151 50.8
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1086.2 1534 44.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.7e-309 1066.2 1127 50.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.4e-290 1003.4 1167 46.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 2.6e-286 989.2 685 75.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.7e-273 944.9 1165 44.9
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.4e-265 919.1 534 86.5
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 9.8e-265 917.5 1403 38.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.1e-263 912.5 681 66.4
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-262 910.6 587 79.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.5e-246 855.9 737 60.7
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 9.3e-207 724.9 563 67.1
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 9.6e-204 714.9 462 75.8
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.2e-201 708.0 437 81.2
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 9.4e-183 645.2 445 69.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.9e-176 623.6 595 52.9
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.8e-149 532.7 445 62.9
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 2.9e-139 500.7 323 77.4
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.2e-133 479.9 381 69.8
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 3.4e-124 450.7 335 72.8
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.2e-107 394.8 1102 29.4
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 3.7e-86 324.3 789 30.9
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.1e-81 307.0 313 52.7
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.0e-80 306.2 188 75.5
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 5.3e-77 293.9 1459 22.8
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.3e-77 293.9 239 67.4
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 7.4e-71 273.5 201 77.1
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.0e-64 253.1 171 67.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.5e-63 249.2 295 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 5.0e-59 234.2 320 39.7
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 5.0e-59 234.2 170 65.9
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 7.2e-58 230.3 207 55.1
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.1e-57 227.3 223 56.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.7e-51 209.1 597 32.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 6.5e-51 207.2 214 60.3
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 8.0e-49 200.3 214 57.5
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 9.1e-45 186.8 219 48.9
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.0e-43 183.3 328 42.1
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.5e-42 178.7 169 58.0
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.3e-38 164.1 183 52.5
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.6e-36 159.5 728 22.9
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 8.6e-35 153.7 87 87.4
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 4.9e-30 137.9 87 79.3
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.8e-28 130.6 83 77.1
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.0e-27 127.9 85 64.7
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.2e-25 120.9 162 45.1
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.3e-24 119.0 138 52.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.7e-22 112.8 65 80.0
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.9e-22 112.1 74 74.3
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 9.2e-21 107.1 171 41.5
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.3e-18 98.2 67 67.2
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-17 96.3 64 73.4
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.8e-16 92.8 96 54.2
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.8e-16 90.9 80 61.2
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.3e-14 86.7 59 74.6
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.3e-14 86.7 60 70.0
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 2.2e-14 85.9 45 84.4
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.1e-13 83.6 69 63.8
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.4e-13 82.4 56 69.6
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.5e-12 78.6 49 73.5
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.1e-10 73.6 55 61.8
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.3e-10 70.9 43 74.4
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.2e-09 70.1 34 79.4
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.6e-09 68.6 48 70.8
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 4.0e-08 65.1 71 50.7
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 5.8e-07 61.2 41 65.9
Rhsim06G0128800 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.6e-07 60.8 42 69.0


User provided reference genes

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