Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.6e-84 313.9 174 100.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.6e-84 313.9 174 100.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.6e-84 313.9 174 100.0
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-81 306.2 174 97.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.3e-79 298.5 174 96.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.0e-72 275.4 167 91.6
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.3e-64 249.2 174 83.3
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.1e-64 248.1 171 84.8
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 3.1e-61 238.8 175 68.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 3.2e-58 228.8 171 76.6
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 9.4e-58 227.3 171 78.4
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 6.1e-57 224.6 171 77.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.0e-56 223.8 167 68.9
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-56 223.0 175 66.9
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 3.9e-56 221.9 175 66.3
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.5e-55 219.9 164 68.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.7e-54 216.5 171 74.3
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-54 216.1 169 66.3
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.8e-54 215.7 165 77.0
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 3.7e-54 215.3 231 51.9
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 6.3e-54 214.5 167 64.1
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.8e-53 213.0 171 68.4
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.0e-51 207.2 173 64.2
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.7e-51 206.5 170 75.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.9e-50 203.0 165 60.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.1e-49 199.5 167 71.3
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.6e-49 198.7 167 71.3
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 3.6e-49 198.7 167 71.3
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 4.7e-49 198.4 160 74.4
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 6.1e-49 198.0 163 74.8
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.0e-49 197.6 168 73.2
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.0e-48 197.2 164 70.7
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.0e-48 195.7 176 57.4
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 8.8e-48 194.1 175 56.0
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 8.8e-48 194.1 166 60.2
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.1e-47 193.7 168 72.0
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.5e-47 193.4 171 68.4
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.0e-47 193.0 168 60.7
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 6.3e-46 188.0 174 55.2
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 6.3e-46 188.0 165 67.9
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 8.2e-46 187.6 171 59.6
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.1e-45 187.2 171 61.4
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.1e-45 187.2 175 56.0
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.4e-45 186.8 166 57.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.1e-45 185.7 174 55.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.1e-45 185.3 174 63.2
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 5.3e-45 184.9 172 66.9
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 5.3e-45 184.9 164 70.7
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 7.0e-45 184.5 168 56.0
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 9.1e-45 184.1 168 66.7
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.2e-44 183.7 173 54.3
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.6e-44 183.3 171 66.1
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.6e-44 182.6 172 66.3
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 4.5e-44 181.8 175 66.3
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 171 55.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 176 66.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 176 66.5
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.2e-43 179.5 165 59.4
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.8e-43 178.7 169 53.8
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.8e-43 178.7 176 65.3
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 5.0e-43 178.3 171 64.9
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 5.0e-43 178.3 174 63.2
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.1e-42 177.2 169 59.8
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.5e-42 176.8 165 55.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.5e-42 176.8 164 66.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.5e-42 176.8 164 66.5
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.9e-42 176.4 171 55.0
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.9e-42 176.4 163 67.5
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.9e-42 176.4 132 81.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.5e-42 176.0 159 67.9
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.5e-42 176.0 171 64.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 3.2e-42 175.6 167 67.7
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 3.2e-42 175.6 175 61.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 5.5e-42 174.9 173 64.2
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 7.2e-42 174.5 174 62.6
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.6e-41 173.3 165 55.8
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.6e-41 173.3 173 53.8
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.1e-41 172.9 166 65.7
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 2.1e-41 172.9 166 65.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.1e-41 172.9 174 60.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.1e-41 172.9 175 67.4
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.6e-41 172.2 174 56.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.1e-41 171.4 170 62.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 8.0e-41 171.0 129 81.4
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.4e-40 170.2 173 53.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 6.7e-40 167.9 164 63.4
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 8.8e-40 167.5 163 64.4
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 8.8e-40 167.5 170 61.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 8.8e-40 167.5 171 63.2
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.5e-39 166.8 173 62.4
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.6e-39 166.0 165 63.0
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.6e-39 166.0 171 63.2
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.4e-39 165.2 173 53.2
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 4.4e-39 165.2 135 78.5
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.7e-39 164.9 170 61.2
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.3e-38 163.7 167 64.7
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.7e-38 163.3 170 62.9
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.8e-38 162.5 166 51.8
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.8e-38 162.5 173 52.0
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.7e-38 162.2 165 51.5
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.7e-38 162.2 182 48.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 4.8e-38 161.8 174 60.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.1e-37 160.6 168 51.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.4e-37 160.2 142 59.9
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 9.1e-37 157.5 172 58.1
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.2e-36 157.1 162 52.5
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.7e-36 156.0 177 54.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.7e-36 156.0 173 50.9
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.7e-36 156.0 173 50.9
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.5e-36 155.2 173 50.9
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.9e-36 154.8 173 50.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 5.9e-36 154.8 158 62.0
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 5.9e-36 154.8 158 62.0
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 164 51.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.2e-35 152.9 111 82.0
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.9e-35 152.5 167 49.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.9e-35 152.5 167 49.7
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 6.5e-35 151.4 121 76.9
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 167 61.1
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.9e-34 149.8 157 49.0
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.9e-34 149.8 157 49.0
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.9e-34 149.8 157 49.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.2e-34 147.9 177 58.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.2e-34 147.9 167 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.1e-33 146.4 108 62.0
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 4.7e-33 145.2 162 48.8
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.7e-33 145.2 177 58.8
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.7e-33 145.2 176 59.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 8.0e-33 144.4 176 59.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.8e-32 143.3 176 55.1
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.3e-32 142.9 169 58.6
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.0e-32 142.5 171 59.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 4.0e-32 142.1 169 58.6
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 4.0e-32 142.1 169 58.6
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 5.2e-32 141.7 169 58.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 6.8e-32 141.4 162 46.9
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 6.8e-32 141.4 152 62.5
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.8e-32 141.4 167 61.1
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.5e-31 140.2 168 59.5
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.3e-30 137.1 170 57.1
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 7.0e-29 131.3 96 66.7
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 7.0e-29 131.3 164 42.7
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.7e-28 127.9 92 68.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 7.7e-28 127.9 148 58.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.7e-27 126.7 148 45.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 9.2e-21 104.4 99 54.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 9.2e-21 104.4 99 53.5
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.0e-19 98.6 125 45.6
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 7.5e-15 84.7 95 45.3
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 9.2e-13 77.8 46 76.1
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 1.2e-07 60.8 68 45.6
CDE09G0940 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 6.4e-06 55.1 70 40.0
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 6.4e-06 55.1 72 37.5
MCO14G492 Micromonas commoda HOM05D000227 ORTHO05D000152 8.3e-06 54.7 75 40.0


User provided reference genes

Program Settings