Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 2357.4 1168 100.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 2345.9 1168 99.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 2134.8 1179 91.7
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 2048.1 1181 88.1
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1907.9 1180 82.2
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1879.4 1075 88.9
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1867.8 1178 80.5
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1839.3 1179 79.6
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1756.5 1164 76.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1729.1 1169 73.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1714.5 1170 73.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1709.5 1177 73.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1706.4 1167 74.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1705.3 1169 73.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1173 74.3
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1698.7 1166 73.7
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1697.2 1170 72.3
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1695.6 1165 73.1
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1687.5 1170 72.7
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1169 72.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1170 72.3
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1164 72.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1168 72.3
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1164 72.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1170 71.7
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1674.4 1164 71.8
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1671.4 1164 71.3
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1666.4 1164 71.1
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1167 70.8
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1664.4 1152 72.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1169 71.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1660.2 1169 71.3
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1659.8 1177 72.0
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1169 71.3
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1658.3 1171 71.8
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1656.3 1165 70.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1656.0 1170 71.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1170 71.5
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1650.2 1158 72.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1169 71.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1646.7 1164 70.5
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1644.8 1172 70.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1638.2 1171 70.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1633.2 1171 70.1
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1632.1 1169 70.5
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1622.4 1170 71.1
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1620.9 1200 68.6
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1615.5 1172 69.5
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1163 69.5
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1163 69.5
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1609.7 1170 68.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1170 70.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1167 70.2
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1170 69.7
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1170 69.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1170 67.9
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1587.4 1170 69.5
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1582.0 1168 68.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1578.5 1183 67.5
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1165 68.6
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1196 67.4
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1177 67.8
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1161 68.9
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1167 67.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1169 67.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1562.4 1169 67.6
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1169 67.8
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1556.6 1164 68.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1556.2 1166 67.1
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1550.0 1164 66.9
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1153 68.0
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1540.0 1167 67.3
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1169 66.9
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1170 67.0
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1170 67.0
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1170 66.8
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1538.1 1163 67.2
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1537.3 1169 66.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1536.5 1169 66.7
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1176 65.2
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1170 66.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1169 66.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1170 66.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1170 66.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1530.4 1167 66.8
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1167 66.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1528.5 1169 66.6
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1527.7 1000 75.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1527.3 1090 70.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1526.5 1171 65.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 1169 65.8
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1169 66.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1517.7 1237 62.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1516.5 1168 66.8
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1515.7 1166 66.0
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1515.0 1170 65.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1513.0 1170 67.0
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1175 65.4
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1165 65.2
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1505.0 1172 65.6
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1504.6 1179 65.1
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1503.4 1163 64.9
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1493.0 1014 75.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1489.2 1139 66.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1483.8 1168 64.2
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1445.6 1165 62.4
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1435.2 1193 61.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1422.5 1170 62.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1417.5 1064 67.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1399.8 1181 60.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1350.9 1018 68.2
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1202.6 873 71.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1127.5 717 78.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1119.0 759 73.4
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1115.9 1170 49.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1109.7 771 72.9
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1099.7 1167 49.2
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1093.2 1168 49.0
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1080.5 1172 48.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1079.3 1209 47.5
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1077.8 753 72.2
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 6.3e-291 1004.6 840 59.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.5e-264 914.8 888 55.1
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.5e-263 912.9 684 69.2
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.2e-245 852.0 961 47.7
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.8e-241 838.2 633 65.6
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 6.2e-230 802.0 769 57.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.1e-224 782.3 571 69.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.0e-212 743.8 1045 43.9
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.0e-184 651.7 579 58.5
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.3e-166 591.7 418 71.1
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.7e-140 504.2 392 67.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.7e-131 474.9 376 64.4
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.6e-121 440.7 313 71.2
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.2e-87 329.3 299 58.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.6e-84 317.4 244 65.6
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 2.4e-64 251.9 138 83.3
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.2e-63 249.6 205 61.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.9e-38 165.2 220 40.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 5.5e-37 161.0 149 59.1
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 4.0e-35 154.8 151 57.6
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 5.9e-31 141.0 108 63.9
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.3e-30 139.0 72 90.3
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 6.6e-30 137.5 156 48.1
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 4.4e-26 124.8 88 70.5
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.2e-18 100.1 94 57.4
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.0e-18 99.4 147 42.9
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.9e-13 82.8 45 86.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.2e-12 80.1 49 69.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 5.2e-11 74.7 103 45.6
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 8.9e-11 73.9 70 48.6
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 6.0e-07 61.2 39 71.8


User provided reference genes

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