Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 7.9e-285 983.0 470 100.0
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.1e-198 696.8 691 57.5
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 9.5e-198 693.7 691 57.6
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 8.1e-197 690.6 691 57.3
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.8e-180 636.3 708 53.8
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 1.8e-180 636.3 691 53.0
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 3.2e-153 545.8 704 47.0
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 4.3e-150 535.4 703 45.8
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 5.7e-134 481.9 509 49.7
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 2.8e-133 479.6 646 43.0
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 2.6e-131 473.0 646 42.0
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 5.9e-131 471.9 473 52.0
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 7.7e-131 471.5 493 48.3
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 3.6e-128 462.6 509 48.7
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 4.7e-128 462.2 519 47.8
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 2.0e-123 446.8 518 46.5
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 1.9e-121 440.3 511 45.8
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 3.2e-121 439.5 514 46.3
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 7.2e-121 438.3 509 47.0
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 1.0e-119 434.5 509 45.6
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 1.4e-119 434.1 511 44.8
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 5.2e-119 432.2 517 45.8
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 1.2e-118 431.0 509 46.0
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 1.2e-118 431.0 652 39.7
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 4.4e-118 429.1 507 43.8
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 5.7e-118 428.7 509 43.2
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 1.7e-117 427.2 514 46.1
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 2.8e-117 426.4 446 48.4
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 6.3e-117 425.2 509 45.4
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 8.3e-117 424.9 509 44.0
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 4.1e-116 422.5 516 45.7
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 5.4e-116 422.2 509 42.8
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 5.4e-116 422.2 509 44.6
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 7.0e-116 421.8 509 44.0
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 1.2e-115 421.0 509 45.0
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 5.9e-115 418.7 513 44.6
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 5.9e-115 418.7 511 43.6
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 1.5e-113 414.1 509 44.8
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 2.5e-113 413.3 509 43.4
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 3.3e-113 412.9 508 43.7
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 5.5e-113 412.1 506 45.1
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 9.5e-113 411.4 511 42.9
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 8.0e-112 408.3 509 42.8
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 1.0e-111 407.9 501 43.7
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 2.3e-111 406.8 510 43.7
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 4.0e-111 406.0 432 47.7
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 4.4e-110 402.5 508 42.1
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 4.4e-110 402.5 510 44.3
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 1.3e-109 401.0 508 43.3
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.2e-109 400.2 509 43.2
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 6.3e-109 398.7 507 43.2
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 2.4e-108 396.7 514 41.4
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 4.1e-108 396.0 511 42.3
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 1.7e-106 390.6 504 42.7
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 1.7e-106 390.6 511 41.5
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 3.3e-105 386.3 502 40.2
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.2e-104 384.4 509 41.1
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 1.6e-104 384.0 506 40.5
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 2.1e-104 383.6 510 43.5
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 1.4e-103 380.9 500 39.8
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 1.8e-103 380.6 501 40.3
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 2.3e-103 380.2 499 40.5
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 3.1e-103 379.8 514 40.3
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 8.9e-103 378.3 511 40.1
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 1.5e-102 377.5 501 41.3
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 2.6e-102 376.7 514 40.1
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 2.6e-102 376.7 501 41.5
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 3.4e-102 376.3 599 37.4
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 5.8e-102 375.6 511 39.9
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 7.5e-102 375.2 431 43.2
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 7.5e-102 375.2 501 40.7
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 1.3e-101 374.4 501 40.1
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 3.7e-101 372.9 501 40.9
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 3.7e-101 372.9 501 39.9
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 4.9e-101 372.5 507 39.1
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 6.4e-101 372.1 501 40.9
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 6.4e-101 372.1 505 40.8
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 6.4e-101 372.1 511 41.1
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.4e-100 370.9 507 40.6
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.4e-100 370.2 507 39.3
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 9.2e-100 368.2 509 40.7
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 9.2e-100 368.2 502 39.8
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 1.2e-99 367.9 506 40.7
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 1.6e-99 367.5 503 39.6
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 2.7e-99 366.7 505 39.8
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 4.6e-99 365.9 495 42.4
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 1.0e-98 364.8 508 39.6
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 3.9e-98 362.8 507 39.8
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 6.6e-98 362.1 507 39.4
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 6.2e-96 355.5 492 40.2
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.4e-95 354.4 473 39.1
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 9.8e-94 348.2 427 44.0
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 1.4e-92 344.4 506 38.9
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 2.8e-80 303.5 442 38.9
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 8.1e-80 302.0 432 39.8
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 2.7e-75 287.0 216 61.1
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.1e-68 265.0 389 41.4
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 1.3e-66 258.1 300 46.0
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 6.2e-64 249.2 187 62.6
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 1.5e-62 244.6 506 29.6
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 9.3e-60 235.3 571 31.0
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.6e-59 234.6 485 31.8
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 2.1e-56 224.2 235 45.1
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 3.4e-54 216.9 151 63.6
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.5e-54 216.5 190 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 7.6e-54 215.7 247 40.5
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 6.0e-51 206.1 460 31.1
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.2e-43 181.8 360 33.3
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 9.7e-41 172.2 489 27.4
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 4.8e-40 169.9 489 27.0
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 1.3e-37 161.8 194 43.3
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 9.4e-36 155.6 446 27.8
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 8.2e-32 142.5 320 31.6
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.4e-31 141.0 447 25.5
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 1.2e-30 138.7 214 36.9
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 1.5e-30 138.3 438 24.7
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.0e-30 137.9 218 35.3
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 3.8e-21 107.1 81 58.0
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 7.2e-20 102.8 63 77.8
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 2.1e-19 101.3 203 30.0
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 8.0e-19 99.4 117 44.4
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 4.4e-17 93.6 57 64.9
MBI17_g38828_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D000022 7.5e-09 66.2 49 61.2
CBR_g41214 Chara braunii HOM05D005079 ORTHO05D006362 1.6e-06 58.5 53 49.1


User provided reference genes

Program Settings