Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2114 Fragaria x ananassa HOM05D006004 ORTHO05D006976 7.9e-184 647.1 361 100.0
FvH4_5g12950 Fragaria vesca HOM05D006004 ORTHO05D006976 4.6e-168 594.7 405 83.5
FAN08G1008 Fragaria x ananassa HOM05D006004 ORTHO05D006976 6.1e-168 594.3 405 85.4
FAN18G3302 Fragaria x ananassa HOM05D006004 ORTHO05D006976 6.9e-164 580.9 428 78.7
RcHm_v2.0_Chr7g0184231 Rosa chinensis HOM05D006004 ORTHO05D006976 3.4e-163 578.6 405 82.7
FAN18G2003 Fragaria x ananassa HOM05D006004 ORTHO05D006976 1.2e-160 570.1 424 78.8
Prupe.5G213600 Prunus persica HOM05D006004 ORTHO05D006976 9.1e-140 500.7 407 70.0
QL10p022090 Quercus lobata HOM05D006004 ORTHO05D006976 8.5e-130 467.6 402 64.4
MD14G1219000 Malus domestica HOM05D006004 ORTHO05D006976 6.1e-128 461.5 406 64.3
CiPaw.15G122500 Carya illinoinensis HOM05D006004 ORTHO05D006976 1.3e-122 443.7 400 62.0
Glyma.17G084300 Glycine max HOM05D006004 ORTHO05D006976 1.0e-119 434.1 400 61.0
VMungo1215G0559 Vigna mungo HOM05D006004 ORTHO05D006976 6.8e-119 431.4 398 61.1
Dinv38608 Davidia involucrata HOM05D006004 ORTHO05D006976 1.3e-117 427.2 390 62.1
Phvul.003G180100 Phaseolus vulgaris HOM05D006004 ORTHO05D006976 1.1e-116 424.1 398 60.1
Manes.01G022600 Manihot esculenta HOM05D006004 ORTHO05D006976 1.6e-115 420.2 336 68.2
Psat4g044640 Pisum sativum HOM05D006004 ORTHO05D006976 1.7e-114 416.8 405 58.3
CANSAT80G2410 Cannabis sativa HOM05D006004 ORTHO05D006976 3.0e-114 416.0 409 58.7
Lalb_Chr07g0178481 Lupinus albus HOM05D006004 ORTHO05D006976 6.6e-114 414.8 361 62.3
Dinv36862 Davidia involucrata HOM05D006004 ORTHO05D006976 3.3e-113 412.5 391 61.6
Actinidia18955 Actinidia chinensis HOM05D006004 ORTHO05D006976 7.3e-113 411.4 390 60.8
Lalb_Chr13g0302541 Lupinus albus HOM05D006004 ORTHO05D006976 3.6e-112 409.1 366 60.9
Hma1.2p1_0340F.1_g130130 Hydrangea macrophylla HOM05D006004 ORTHO05D006976 6.2e-112 408.3 392 60.2
Ca_21732_v3 Cicer arietinum L. HOM05D006004 ORTHO05D006976 1.8e-111 406.8 423 56.5
Haze_18564 Corylus avellana HOM05D006004 ORTHO05D006976 5.2e-111 405.2 400 57.5
Glyma.05G016000 Glycine max HOM05D006004 ORTHO05D006976 5.8e-110 401.7 403 57.6
Thecc.03G114100 Theobroma cacao HOM05D006004 ORTHO05D006976 5.8e-110 401.7 397 55.9
GSVIVG01008201001 Vitis vinifera HOM05D006004 ORTHO05D006976 7.5e-110 401.4 403 55.3
PGR044G2256 Punica granatum HOM05D006004 ORTHO05D006976 1.3e-109 400.6 356 61.2
Migut.D01490 Erythranthe guttata HOM05D006004 ORTHO05D006976 1.7e-109 400.2 400 58.8
Actinidia35066 Actinidia chinensis HOM05D006004 ORTHO05D006976 2.2e-109 399.8 398 56.8
arahy.Tifrunner.gnm1.ann1.4WKV82 Arachis hypogaea HOM05D006004 ORTHO05D006976 2.9e-109 399.4 398 59.8
Sabra15G0076000 Salix brachista HOM05D006004 ORTHO05D006976 3.7e-109 399.1 408 57.8
arahy.Tifrunner.gnm1.ann1.N2LMFJ Arachis hypogaea HOM05D006004 ORTHO05D006976 6.4e-109 398.3 398 60.8
Potri.015G052200 Populus trichocarpa HOM05D006004 ORTHO05D006976 1.1e-108 397.5 394 58.4
Eucgr.K02642 Eucalyptus grandis HOM05D006004 ORTHO05D006976 4.6e-107 392.1 354 60.2
MD06G1208600 Malus domestica HOM05D006004 ORTHO05D006976 7.8e-107 391.3 400 60.2
Rhsim12G0145700 Rhododendron simsii HOM05D006004 ORTHO05D006976 1.0e-106 391.0 391 60.4
Aqoxy3G03831 Aquilegia oxysepala HOM05D006004 ORTHO05D006976 1.3e-106 390.6 405 60.2
Medtr4g112530 Medicago truncatula HOM05D006004 ORTHO05D006976 1.7e-106 390.2 406 57.9
HanXRQChr16g0502021 Helianthus annuus HOM05D006004 ORTHO05D006976 2.3e-106 389.8 407 56.8
TPR.G2782 Trifolium pratense HOM05D006004 ORTHO05D006976 6.6e-106 388.3 367 61.0
BcaC09g49695 Brassica carinata HOM05D006004 ORTHO05D006976 8.6e-106 387.9 392 57.1
DCAR_015123 Daucus carota HOM05D006004 ORTHO05D006976 8.6e-106 387.9 404 57.9
PSO063G5123 Papaver somniferum HOM05D006004 ORTHO05D006976 1.9e-105 386.7 404 58.4
Lsat_1_v5_gn_4_111701 Lactuca sativa HOM05D006004 ORTHO05D006976 5.6e-105 385.2 408 57.6
Manes.05G116700 Manihot esculenta HOM05D006004 ORTHO05D006976 5.6e-105 385.2 393 58.0
PSO782G5175 Papaver somniferum HOM05D006004 ORTHO05D006976 9.5e-105 384.4 405 58.5
ECA232G0726 Erigeron canadensis HOM05D006004 ORTHO05D006976 1.6e-104 383.6 371 58.5
Lj4g0027030 Lotus japonicus HOM05D006004 ORTHO05D006976 2.8e-104 382.9 400 55.2
ClCG04G011410 Citrullus lanatus HOM05D006004 ORTHO05D006976 8.1e-104 381.3 409 55.0
Carub.0006s2084 Capsella rubella HOM05D006004 ORTHO05D006976 2.6e-102 376.3 369 59.1
Hund02533 Selenicereus undatus HOM05D006004 ORTHO05D006976 5.8e-102 375.2 393 53.9
Lj9A434T79 Lonicera japonica HOM05D006004 ORTHO05D006976 7.5e-102 374.8 404 55.7
TWI81G0634 Tripterygium wilfordii HOM05D006004 ORTHO05D006976 1.7e-101 373.6 398 54.8
CsaV3_1G006370 Cucumis sativus L. HOM05D006004 ORTHO05D006976 3.7e-101 372.5 405 54.8
Duzib068G1132 Durio zibethinus HOM05D006004 ORTHO05D006976 1.9e-100 370.2 394 51.5
Nitab4.5_0004342g0050 Nicotiana tabacum HOM05D006004 ORTHO05D006976 1.9e-100 370.2 359 56.8
AL6G34230 Arabidopsis lyrata HOM05D006004 ORTHO05D006976 7.1e-100 368.2 367 57.2
Peaxi162Scf00017g03030 Petunia axillaris HOM05D006004 ORTHO05D006976 1.2e-99 367.5 390 53.3
Oeu031928.2 Olea europaea HOM05D006004 ORTHO05D006976 7.8e-99 364.8 399 54.6
CARHR190470 Cardamine hirsuta HOM05D006004 ORTHO05D006976 1.3e-98 364.0 403 54.1
MELO3C002063.2 Cucumis melo HOM05D006004 ORTHO05D006976 2.3e-98 363.2 417 53.0
Sc04g0003860 Simmondsia chinensis HOM05D006004 ORTHO05D006976 5.1e-98 362.1 398 53.5
PGSC0003DMG400024508 Solanum tuberosum HOM05D006004 ORTHO05D006976 6.6e-98 361.7 401 55.9
Sp2g24060 Schrenkiella parvula HOM05D006004 ORTHO05D006976 2.5e-97 359.8 401 53.1
Aa31LG11G2560 Aethionema arabicum HOM05D006004 ORTHO05D006976 5.6e-97 358.6 401 52.1
A03p46450 Brassica napus HOM05D006004 ORTHO05D006976 9.5e-97 357.8 401 53.1
BraA03t13771Z Brassica rapa HOM05D006004 ORTHO05D006976 9.5e-97 357.8 401 53.1
BcaNung02628 Brassica carinata HOM05D006004 ORTHO05D006976 1.2e-96 357.5 401 53.1
C07p44490 Brassica napus HOM05D006004 ORTHO05D006976 1.2e-96 357.5 401 53.1
BolC7t44968H Brassica oleracea HOM05D006004 ORTHO05D006976 1.2e-96 357.5 401 53.1
AT5G23060 Arabidopsis thaliana HOM05D006004 ORTHO05D006976 1.6e-96 357.1 369 56.1
Thhalv10004373m.g Eutrema salsugineum HOM05D006004 ORTHO05D006976 4.7e-96 355.5 349 57.9
BcaC06g33190 Brassica carinata HOM05D006004 ORTHO05D006976 1.8e-95 353.6 356 56.7
SalBow1G1782 Salvia bowleyana HOM05D006004 ORTHO05D006976 4.0e-95 352.4 421 52.5
Nitab4.5_0000646g0210 Nicotiana tabacum HOM05D006004 ORTHO05D006976 3.4e-94 349.4 392 52.6
MSTRG.9575 Avicennia marina HOM05D006004 ORTHO05D006976 1.3e-93 347.4 351 55.8
C01p33840 Brassica napus HOM05D006004 ORTHO05D006976 2.2e-93 346.7 392 52.8
BolC1t03349H Brassica oleracea HOM05D006004 ORTHO05D006976 2.2e-93 346.7 392 52.8
Gorai.001G065100 Gossypium raimondii HOM05D006004 ORTHO05D006976 4.9e-93 345.5 400 52.2
Cc04_g07800 Coffea canephora HOM05D006004 ORTHO05D006976 2.1e-91 340.1 392 51.5
COL.COLO4_32170 Corchorus olitorius HOM05D006004 ORTHO05D006976 2.1e-91 340.1 351 53.8
unitig_8.g3285 Utricularia gibba HOM05D000076 ORTHO05D006976 3.5e-91 339.3 351 53.6
CDE01G0597 Ceratophyllum demersum HOM05D006004 ORTHO05D006976 7.8e-91 338.2 361 52.4
THA.LOC104800943 Tarenaya hassleriana HOM05D006004 ORTHO05D006976 7.8e-91 338.2 394 54.6
Sed0014753 Sechium edule HOM05D006004 ORTHO05D006976 1.3e-90 337.4 361 54.3
Gohir.A07G057100 Gossypium hirsutum HOM05D006004 ORTHO05D006976 2.3e-90 336.7 399 51.4
Gohir.D07G061400 Gossypium hirsutum HOM05D006004 ORTHO05D006976 4.3e-89 332.4 395 50.4
Solyc03g114450.3 Solanum lycopersicum HOM05D006004 ORTHO05D006976 5.6e-89 332.0 401 52.6
Atru.chr9.693 Acer truncatum HOM05D006004 ORTHO05D006976 2.4e-87 326.6 366 53.8
Sopen03g033550 Solanum pennellii HOM05D006004 ORTHO05D006976 6.9e-87 325.1 403 52.6
EL10Ac5g11222 Beta vulgaris HOM05D006004 ORTHO05D006976 7.1e-84 315.1 410 48.0
Cfa019848 Carpinus fangiana HOM05D000764 ORTHO05D002006 9.3e-84 314.7 298 61.1
CAN.G982.4 Capsicum annuum HOM05D006004 ORTHO05D006976 9.6e-81 304.7 403 50.1
HPP92_019401 Vanilla planifolia HOM05D006004 ORTHO05D006976 9.0e-79 298.1 365 45.5
Cpa.g.sc13.84 Carica papaya HOM05D000764 ORTHO05D002006 3.8e-77 292.7 300 60.3
Thecc.03G091900 Theobroma cacao HOM05D006004 ORTHO05D006976 8.4e-77 291.6 267 57.3
AUR62032166 Chenopodium quinoa HOM05D006004 ORTHO05D006976 4.2e-76 289.3 405 44.4
AUR62036924 Chenopodium quinoa HOM05D006004 ORTHO05D006976 3.5e-75 286.2 405 44.0
vmacro16462 Vaccinium macrocarpon HOM05D006004 ORTHO05D006976 1.8e-74 283.9 449 44.8
CDE02G3844 Ceratophyllum demersum HOM05D006004 ORTHO05D006976 9.9e-70 268.1 272 54.8
SEGI_01456 Sequoiadendron giganteum HOM05D006004 ORTHO05D006976 4.9e-69 265.8 335 42.7
ATR0752G115 Amborella trichopoda HOM05D006004 ORTHO05D006976 6.4e-69 265.4 340 46.8
Ciclev10018681m.g Citrus clementina HOM05D000011 ORTHO05D006976 2.7e-67 260.0 284 54.9
Os02g0729400 Oryza sativa ssp. japonica HOM05D006004 ORTHO05D006976 2.7e-67 260.0 324 46.9
Aqoxy3G00419 Aquilegia oxysepala HOM05D006004 ORTHO05D006976 1.8e-66 257.3 395 41.8
MBI14_g38619_MAGBIO Magnolia biondii HOM05D006004 ORTHO05D006976 5.1e-66 255.8 271 52.8
TAR374G1242 Trochodendron aralioides HOM05D006004 ORTHO05D006976 9.6e-65 251.5 405 41.2
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 2.3e-58 230.3 384 40.6
Pp3c14_1540 Physcomitrium patens HOM05D006004 ORTHO05D006976 6.7e-58 228.8 322 37.3
Mapoly0104s0007 Marchantia polymorpha HOM05D006004 ORTHO05D006976 1.9e-57 227.3 348 39.1
Pp3c3_8190 Physcomitrium patens HOM05D006004 ORTHO05D006976 1.4e-55 221.1 319 38.2
TAR622G0980 Trochodendron aralioides HOM05D006004 ORTHO05D006976 4.1e-55 219.5 302 46.4
Pp3c2_19400 Physcomitrium patens HOM05D006004 ORTHO05D006976 4.2e-52 209.5 356 34.8
AagrBONN_evm.TU.Sc2ySwM_340.20 Anthoceros agrestis HOM05D006004 ORTHO05D006976 6.1e-51 205.7 341 35.8
SMO147G0273 Selaginella moellendorffii HOM05D006004 ORTHO05D006976 1.6e-48 197.6 306 37.6
Zm00001eb189890 Zea mays HOM05D006004 ORTHO05D006976 6.3e-48 195.7 242 46.3
Medtr4g111880 Medicago truncatula HOM05D006004 ORTHO05D006976 3.0e-34 150.2 165 57.6
Psat5g089560 Pisum sativum HOM05D006004 ORTHO05D006976 1.1e-33 148.3 118 66.9
SGA_v2.0_scaffold171G38896 Striga asiatica HOM05D006004 ORTHO05D006976 2.4e-31 140.6 116 60.3
CBR_g8983 Chara braunii HOM05D006004 ORTHO05D006976 1.1e-28 131.7 264 31.1
Psat7g221200 Pisum sativum HOM05D006004 ORTHO05D006976 2.7e-27 127.1 99 66.7
TAR633G2114 Trochodendron aralioides HOM05D006004 ORTHO05D006976 8.8e-26 122.1 107 65.4
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 3.1e-23 113.6 206 37.9
TPR.G40471 Trifolium pratense HOM05D006004 ORTHO05D006976 9.1e-23 112.1 121 60.3
CAN.G229.16 Capsicum annuum HOM05D006004 ORTHO05D000589 8.5e-21 105.5 100 54.0
Prupe.5G213400 Prunus persica HOM05D006004 ORTHO05D006976 5.5e-20 102.8 66 75.8
Psat7g221160 Pisum sativum HOM05D040370 ORTHO05D006976 1.4e-18 98.2 98 56.1
MBI14_g38620_MAGBIO Magnolia biondii HOM05D006004 ORTHO05D006976 1.3e-16 91.7 51 80.4
Cre12.g497300 Chlamydomonas reinhardtii HOM05D006004 ORTHO05D006976 1.1e-15 88.6 294 25.5
Psat2g062240 Pisum sativum HOM05D006004 ORTHO05D006976 7.7e-14 82.4 69 62.3
PRCOL_00006946 Prasinoderma coloniale HOM05D006004 ORTHO05D006976 3.2e-12 77.0 198 28.3
Oeu012975.1 Olea europaea HOM05D006004 ORTHO05D006976 1.1e-07 62.0 40 67.5
VMungo0647G2346 Vigna mungo HOM05D030527 ORTHO05D006976 7.8e-06 55.8 47 59.6


User provided reference genes

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