Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.2e-105 386.7 222 100.0
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 4.2e-103 378.3 222 89.2
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.1e-102 374.4 222 97.3
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.3e-101 372.5 222 88.3
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.3e-100 368.6 222 87.8
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 9.7e-92 340.5 222 91.9
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 6.5e-64 248.1 229 64.6
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.6e-54 216.9 178 66.9
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 4.7e-54 215.3 212 64.6
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 6.1e-54 214.9 165 67.9
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.6e-52 209.5 185 68.1
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 4.9e-51 205.3 163 63.8
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 8.3e-51 204.5 175 66.9
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.4e-50 203.8 163 72.4
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 4.1e-50 202.2 174 64.9
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 7.0e-50 201.4 168 67.3
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 9.2e-50 201.1 164 66.5
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 2.0e-49 199.9 175 63.4
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 2.0e-49 199.9 168 63.1
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.5e-49 199.1 178 59.6
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 3.5e-49 199.1 178 59.6
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 3.5e-49 199.1 172 66.9
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 4.6e-49 198.7 234 53.8
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 7.8e-49 198.0 227 58.1
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.7e-48 196.8 197 55.3
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 5.0e-48 195.3 176 70.5
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 5.0e-48 195.3 165 63.6
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 5.0e-48 195.3 188 58.5
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 5.0e-48 195.3 116 81.9
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 6.6e-48 194.9 205 62.4
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 8.6e-48 194.5 118 81.4
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 8.6e-48 194.5 181 71.8
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 1.5e-47 193.7 183 72.1
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 3.3e-47 192.6 154 69.5
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 4.3e-47 192.2 161 61.5
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 4.3e-47 192.2 111 84.7
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 4.3e-47 192.2 163 64.4
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 4.3e-47 192.2 167 62.3
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 5.6e-47 191.8 159 61.0
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.6e-47 191.8 192 54.2
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 5.6e-47 191.8 169 62.1
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 9.5e-47 191.0 181 66.3
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 1.2e-46 190.7 177 68.4
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 1.2e-46 190.7 167 64.7
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 2.1e-46 189.9 178 57.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.1e-46 189.9 173 68.8
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 2.8e-46 189.5 171 63.2
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 2.8e-46 189.5 164 61.0
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 2.8e-46 189.5 166 68.1
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 3.6e-46 189.1 164 62.2
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 4.7e-46 188.7 176 69.9
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 4.7e-46 188.7 163 62.0
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 8.0e-46 188.0 170 58.8
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 8.0e-46 188.0 153 69.9
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 8.0e-46 188.0 110 84.5
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 1.4e-45 187.2 166 59.0
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.4e-45 187.2 157 59.9
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 1.8e-45 186.8 115 79.1
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 1.8e-45 186.8 174 69.5
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 2.3e-45 186.4 160 60.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 4.0e-45 185.7 160 66.2
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 4.0e-45 185.7 162 58.0
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 6.8e-45 184.9 118 74.6
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 6.8e-45 184.9 181 69.1
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 6.8e-45 184.9 169 60.9
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 1.2e-44 184.1 178 62.4
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 2.0e-44 183.3 164 60.4
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.4e-44 182.6 166 59.6
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 7.5e-44 181.4 162 63.0
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 9.8e-44 181.0 179 67.0
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.7e-43 180.3 155 61.3
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 1.7e-43 180.3 170 70.0
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 6.4e-43 178.3 176 54.5
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.4e-42 177.2 168 61.9
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.9e-42 176.8 181 54.7
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 3.2e-42 176.0 161 70.8
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 1.2e-41 174.1 110 77.3
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 1.6e-41 173.7 118 69.5
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.6e-41 173.7 112 73.2
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 2.7e-41 172.9 193 52.8
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 3.5e-41 172.6 192 54.7
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 4.6e-41 172.2 119 72.3
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 4.6e-41 172.2 119 72.3
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 6.0e-41 171.8 119 72.3
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 7.8e-41 171.4 119 72.3
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 7.8e-41 171.4 119 72.3
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.3e-40 170.6 118 71.2
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 3.0e-40 169.5 119 71.4
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 3.0e-40 169.5 190 54.7
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 3.9e-40 169.1 153 58.8
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 6.6e-40 168.3 190 51.6
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 1.1e-39 167.5 119 70.6
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.5e-39 167.2 118 69.5
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 3.3e-39 166.0 113 71.7
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 6.8e-37 158.3 174 50.0
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 3.4e-36 156.0 107 72.9
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 3.4e-36 156.0 114 65.8
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.7e-35 153.7 179 49.2
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 4.9e-35 152.1 107 64.5
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 6.4e-35 151.8 111 61.3
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.1e-34 151.0 101 71.3
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 2.4e-34 149.8 89 80.9
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.1e-34 149.1 118 65.3
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 5.4e-34 148.7 149 53.0
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 9.2e-34 147.9 164 62.2
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.1e-33 146.7 178 47.8
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 4.0e-29 132.5 118 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 4.6e-25 119.0 113 49.6
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 8.6e-24 114.8 111 50.5
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 1.5e-23 114.0 102 52.9
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 7.3e-23 111.7 109 51.4
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 3.1e-21 106.3 128 51.6
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 2.9e-19 99.8 130 66.2
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 8.1e-14 81.6 72 51.4
RcHm_v2.0_Chr2g0176741 Rosa chinensis HOM05D000557 ORTHO05D002315 2.1e-09 67.0 57 68.4
FvH4_6g54460 Fragaria vesca HOM05D000557 ORTHO05D002315 2.3e-08 63.5 55 67.3
FAN09G4469 Fragaria x ananassa HOM05D000557 ORTHO05D002315 2.3e-08 63.5 55 67.3
FAN14G1712 Fragaria x ananassa HOM05D000557 ORTHO05D002315 2.3e-08 63.5 55 67.3
PGR142G0869 Punica granatum HOM05D000557 ORTHO05D002315 3.9e-08 62.8 55 67.3
MD09G1000800 Malus domestica HOM05D000557 ORTHO05D002315 2.5e-07 60.1 55 65.5
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 3.3e-07 59.7 57 59.6
GSVIVG01032942001 Vitis vinifera HOM05D000557 ORTHO05D002315 3.3e-07 59.7 55 65.5
MD17G1003500 Malus domestica HOM05D000557 ORTHO05D002315 4.3e-07 59.3 55 65.5
Prupe.3G315500 Prunus persica HOM05D000557 ORTHO05D002315 5.6e-07 58.9 55 63.6
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.4e-07 58.5 120 34.2
QL02p068153 Quercus lobata HOM05D000557 ORTHO05D002315 9.6e-07 58.2 57 61.4
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 1.6e-06 57.4 92 54.3
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.1e-06 57.0 43 69.8
Eucgr.I01564 Eucalyptus grandis HOM05D000557 ORTHO05D002315 6.2e-06 55.5 55 61.8


User provided reference genes

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