Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 4.0e-210 734.6 382 100.0
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 1.2e-201 706.4 382 96.9
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.2e-201 706.4 382 97.1
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 4.1e-199 698.0 382 95.5
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 1.0e-149 533.9 392 77.6
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 1.1e-103 380.9 428 55.8
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 2.3e-88 330.1 429 52.4
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 2.4e-82 310.1 439 49.2
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 1.0e-72 278.1 452 44.5
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 5.0e-72 275.8 450 45.6
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 6.2e-70 268.9 472 44.3
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 3.1e-69 266.5 447 43.2
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 8.9e-69 265.0 436 44.0
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 5.8e-68 262.3 457 43.5
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 6.4e-67 258.8 433 45.7
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 1.5e-63 247.7 467 43.0
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 1.4e-61 241.1 463 40.8
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 3.1e-61 240.0 427 43.8
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 6.8e-61 238.8 444 42.8
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 4.4e-60 236.1 437 41.4
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 5.8e-60 235.7 440 40.5
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 6.4e-59 232.3 441 39.5
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 1.1e-58 231.5 476 40.3
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 1.9e-58 230.7 444 39.9
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 3.2e-58 229.9 441 41.0
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 9.2e-58 228.4 442 41.6
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 1.0e-56 224.9 437 40.7
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 3.9e-56 223.0 444 39.6
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 5.1e-56 222.6 437 41.6
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 6.6e-56 222.2 423 39.5
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 1.1e-55 221.5 430 42.6
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 1.1e-55 221.5 411 39.2
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 1.5e-55 221.1 480 35.8
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 4.3e-55 219.5 474 37.8
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 2.1e-54 217.2 413 42.1
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 3.6e-54 216.5 425 42.4
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 1.1e-53 214.9 482 39.4
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 1.4e-53 214.5 483 37.7
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 1.4e-53 214.5 426 41.3
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 2.4e-53 213.8 421 40.6
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 7.6e-52 208.8 425 38.8
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 2.2e-51 207.2 422 38.9
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 2.9e-51 206.8 429 37.8
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.9e-51 206.1 423 39.5
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.9e-51 206.1 423 39.5
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 4.9e-51 206.1 426 39.0
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 1.4e-50 204.5 388 41.0
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 3.2e-50 203.4 415 38.6
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 1.7e-48 197.6 425 39.1
Sabra17G0013400 Salix brachista HOM05D006668 ORTHO05D008252 2.3e-48 197.2 449 38.8
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 3.0e-48 196.8 461 36.9
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 3.9e-48 196.4 458 35.2
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 8.7e-48 195.3 460 36.5
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 1.5e-47 194.5 428 38.3
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 7.3e-47 192.2 431 38.3
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 1.6e-46 191.0 449 36.5
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 3.6e-46 189.9 416 35.8
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 8.1e-46 188.7 454 35.7
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 2.4e-45 187.2 433 37.0
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 6.9e-45 185.7 425 38.6
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 1.5e-44 184.5 416 35.1
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 1.5e-44 184.5 203 55.2
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 2.0e-44 184.1 407 36.4
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 4.4e-44 183.0 432 35.9
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 5.8e-44 182.6 416 34.9
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 1.3e-43 181.4 401 35.7
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 1.3e-43 181.4 401 35.7
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 1.9e-42 177.6 452 35.4
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 3.2e-42 176.8 469 35.0
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 4.2e-42 176.4 422 34.8
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 1.6e-41 174.5 426 33.8
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 2.1e-41 174.1 437 37.8
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 1.7e-40 171.0 255 41.6
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 3.9e-40 169.9 421 35.9
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 6.6e-40 169.1 423 35.7
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 1.9e-39 167.5 268 41.8
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 2.5e-39 167.2 432 32.6
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 1.3e-38 164.9 253 40.3
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 9.0e-37 158.7 414 34.8
AUR62036068 Chenopodium quinoa HOM05D006668 ORTHO05D008252 2.6e-36 157.1 467 32.1
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 8.4e-35 152.1 272 43.0
Sc12g0003270 Simmondsia chinensis HOM05D006668 ORTHO05D008252 1.1e-34 151.8 443 33.6
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 1.1e-34 151.8 411 34.3
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 1.4e-34 151.4 384 36.2
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 3.2e-34 150.2 334 35.6
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 5.5e-34 149.4 447 32.7
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 7.1e-34 149.1 421 32.3
Eucgr.K01063 Eucalyptus grandis HOM05D006668 ORTHO05D008252 9.3e-34 148.7 442 33.0
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 2.1e-33 147.5 425 33.9
RcHm_v2.0_Chr7g0225321 Rosa chinensis HOM05D006668 ORTHO05D008252 1.3e-32 144.8 102 78.4
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 6.2e-30 136.0 444 33.1
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 2.4e-29 134.0 165 53.3
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 1.5e-28 131.3 462 29.9
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 1.3e-27 128.3 440 32.0
EL10Ac9g20828 Beta vulgaris HOM05D006668 ORTHO05D008252 1.7e-27 127.9 482 31.3
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 2.2e-27 127.5 322 33.9
Sed0015399 Sechium edule HOM05D006668 ORTHO05D008252 3.8e-27 126.7 384 32.8
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 4.2e-26 123.2 167 44.3
Zm00001eb295870 Zea mays HOM05D006668 ORTHO05D008252 9.3e-26 122.1 372 32.0
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 1.6e-25 121.3 272 35.3
Dinv06849 Davidia involucrata HOM05D006668 ORTHO05D008252 5.7e-23 112.8 282 38.3
Os05g0564000 Oryza sativa ssp. japonica HOM05D006668 ORTHO05D008252 1.4e-21 108.2 184 39.1
SEGI_30235 Sequoiadendron giganteum HOM05D006668 ORTHO05D008252 2.4e-21 107.5 318 31.4
Haze_13262 Corylus avellana HOM05D006668 ORTHO05D008252 2.9e-19 100.5 222 37.8
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.0e-16 92.0 125 49.6
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 8.7e-16 89.0 119 50.4
ATR0602G055 Amborella trichopoda HOM05D006668 ORTHO05D008252 6.3e-14 82.8 290 28.3
Mapoly0050s0110 Marchantia polymorpha HOM05D006668 ORTHO05D008252 1.0e-08 65.5 424 25.7
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 1.4e-08 65.1 258 28.7
AUR62043432 Chenopodium quinoa HOM05D006668 ORTHO05D008252 1.8e-08 64.7 127 39.4
Sabra07G0109400 Salix brachista HOM05D006668 ORTHO05D008252 2.5e-07 60.8 75 46.7
CSS0037366 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.3e-06 58.5 212 32.5
CSS0027561 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.7e-06 58.2 212 30.7
ATR0602G285 Amborella trichopoda HOM05D006668 ORTHO05D008252 8.2e-06 55.8 116 36.2


User provided reference genes

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