Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.1e-201 704.9 351 100.0
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.6e-197 691.0 343 100.0
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-196 689.9 343 99.7
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.6e-195 683.3 343 99.1
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 6.3e-186 654.1 323 100.0
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.3e-186 654.1 323 100.0
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-180 636.7 324 97.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.0e-180 635.2 324 97.2
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.8e-177 625.9 310 100.0
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.2e-162 575.9 324 89.5
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 7.1e-105 384.8 336 61.9
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.3e-81 304.7 149 100.0
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.0e-75 287.0 333 54.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.7e-74 283.9 333 53.2
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.7e-66 257.3 314 48.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.4e-63 247.7 366 42.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 2.4e-60 236.9 336 43.5
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.4e-55 221.1 293 43.3
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.3e-54 216.5 308 42.9
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 7.4e-54 215.3 341 38.7
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 8.2e-53 211.8 341 38.1
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.1e-52 211.5 341 37.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 7.0e-52 208.8 341 37.2
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.2e-50 203.8 313 41.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.9e-49 200.7 327 40.7
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.3e-45 188.0 316 38.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.2e-45 187.2 307 38.1
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.8e-44 184.1 339 37.8
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.2e-43 181.4 341 36.4
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.6e-43 181.0 345 39.1
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.5e-43 179.9 341 35.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.7e-43 178.7 341 35.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.0e-42 178.3 336 38.1
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.3e-42 177.9 307 38.4
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.5e-42 175.6 341 35.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-41 174.9 341 34.9
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.5e-41 174.5 341 34.9
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 5.5e-41 172.6 364 35.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.3e-37 158.7 316 37.3
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.1e-36 158.3 361 33.0
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.2e-33 146.4 331 33.2
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.2e-29 134.0 335 33.7
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.1e-28 131.7 213 39.9
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.4e-28 130.6 273 35.2
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.6e-27 127.9 295 33.2
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.5e-27 126.7 320 33.4
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 4.5e-27 126.3 308 33.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.5e-27 126.3 307 32.2
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 5.9e-27 125.9 321 32.1
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 5.9e-27 125.9 304 32.2
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 3.3e-25 120.2 279 31.9
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 5.6e-25 119.4 305 32.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 7.2e-25 119.0 304 32.2
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.2e-24 118.2 354 30.2
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.8e-24 117.1 304 31.6
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 6.8e-23 112.5 302 31.1
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.2e-22 111.7 315 31.7
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 9.8e-22 108.6 309 30.7
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.3e-21 108.2 309 30.7
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.4e-20 104.8 344 28.8
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.7e-19 100.5 288 30.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 5.9e-19 99.4 279 29.4
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-18 98.6 327 28.4
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.3e-18 98.2 332 28.9
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.3e-18 97.4 247 32.0
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.9e-18 97.1 330 28.8
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-17 95.1 255 29.0
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 2.1e-16 90.9 319 27.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.8e-16 90.5 363 27.0
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 6.2e-16 89.4 160 37.5
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.8e-15 87.8 334 27.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.1e-15 87.0 299 29.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 4.0e-15 86.7 325 27.1
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 8.9e-15 85.5 320 27.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.4e-14 83.6 286 28.0
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.4e-14 83.2 310 28.4
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 5.8e-14 82.8 152 36.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.2e-13 80.9 274 27.0
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.9e-13 79.7 298 28.5
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.6e-11 74.7 349 27.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.8e-11 72.4 259 26.6
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.8e-11 72.4 277 26.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.3e-10 71.6 337 25.5
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.7e-10 71.2 338 26.6
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.3e-10 70.9 336 25.3
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.9e-10 70.1 365 25.5
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 6.6e-10 69.3 140 37.1
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.5e-09 68.2 208 29.3
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.5e-09 67.4 144 36.8
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.3e-09 67.0 347 25.6
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 4.3e-09 66.6 338 26.6
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 7.3e-09 65.9 330 24.8
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 7.3e-09 65.9 227 27.8
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.6e-08 64.7 208 29.3
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.7e-08 63.2 145 31.0
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.2e-08 62.8 292 25.3
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.8e-07 61.2 312 24.7
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 2.3e-07 60.8 184 32.1
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.3e-07 60.8 184 32.1
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.3e-07 60.8 184 32.1
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.1e-07 60.5 289 27.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.0e-07 60.1 321 25.2
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 4.0e-07 60.1 335 26.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 5.2e-07 59.7 307 24.4
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.2e-06 58.5 320 26.6
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 5.8e-06 56.2 217 28.1
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 7.5e-06 55.8 156 32.1
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 7.5e-06 55.8 235 25.5
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 7.5e-06 55.8 319 27.3
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 7.5e-06 55.8 317 24.0
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 9.8e-06 55.5 218 26.6


User provided reference genes

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