Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.5e-242 842.4 417 100.0
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 9.6e-234 813.1 410 98.3
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.2e-223 779.6 415 94.5
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 7.6e-223 776.9 417 94.0
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 7.9e-220 766.9 408 94.4
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 2.7e-164 582.4 431 70.8
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 4.7e-164 581.6 422 71.6
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 7.8e-135 484.6 376 67.0
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 5.6e-133 478.4 424 60.4
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 6.6e-126 454.9 448 54.9
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 4.7e-124 448.7 429 56.4
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 8.1e-124 448.0 442 56.1
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 1.1e-120 437.6 435 55.6
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 3.9e-118 429.1 424 55.4
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 4.8e-116 422.2 219 91.8
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 1.4e-115 420.6 427 52.9
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.8e-115 420.2 435 51.7
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 4.0e-115 419.1 427 53.2
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 4.0e-115 419.1 431 54.8
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.3e-113 414.1 424 55.2
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.4e-112 410.6 430 52.8
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 2.7e-111 406.4 415 53.5
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 3.9e-110 402.5 456 52.0
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 1.5e-109 400.6 425 53.6
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 3.3e-109 399.4 423 52.7
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.3e-109 399.4 428 54.9
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 6.2e-108 395.2 430 49.3
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.1e-107 394.4 426 52.1
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 1.8e-107 393.7 427 54.1
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 5.3e-107 392.1 419 53.5
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 2.6e-106 389.8 433 52.9
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 3.4e-106 389.4 429 50.1
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 3.4e-106 389.4 417 52.3
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 2.2e-105 386.7 460 49.6
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 3.8e-105 386.0 418 52.2
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 1.9e-104 383.6 416 51.7
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 1.9e-104 383.6 416 51.7
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.4e-104 383.3 432 48.6
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 5.5e-104 382.1 464 48.1
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 7.9e-103 378.3 395 52.4
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 1.8e-102 377.1 427 48.5
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 2.3e-102 376.7 412 50.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.0e-102 376.3 428 52.3
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 5.1e-102 375.6 438 50.0
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 6.7e-102 375.2 416 51.7
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 2.8e-100 369.8 425 49.4
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 2.8e-100 369.8 428 49.5
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 8.2e-100 368.2 440 48.0
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 2.4e-99 366.7 427 49.2
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 5.3e-99 365.5 419 48.2
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 5.3e-99 365.5 421 49.6
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 2.6e-98 363.2 440 49.8
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.0e-97 361.3 410 49.8
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.9e-96 357.1 429 47.3
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 3.2e-96 356.3 429 46.9
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 3.2e-96 356.3 431 47.6
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 9.3e-96 354.8 426 48.1
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 4.6e-95 352.4 421 48.7
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 7.9e-95 351.7 411 49.1
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 1.8e-94 350.5 408 47.8
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.3e-94 350.1 420 47.1
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 7.4e-93 345.1 431 46.4
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 8.2e-92 341.7 423 47.0
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 1.0e-89 334.7 403 49.9
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.7e-89 334.0 407 47.7
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.7e-89 334.0 422 45.0
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 2.2e-89 333.6 402 47.5
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 5.0e-89 332.4 427 46.4
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 3.2e-88 329.7 421 47.0
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 2.1e-87 327.0 430 46.7
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 3.6e-87 326.2 448 43.8
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 2.3e-86 323.6 431 44.3
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 3.9e-86 322.8 429 43.6
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 8.7e-86 321.6 423 44.0
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.9e-85 320.5 429 43.4
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 5.7e-85 318.9 195 84.1
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.8e-83 313.9 407 47.4
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 3.1e-83 313.2 423 44.7
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.1e-83 313.2 401 45.1
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 5.0e-81 305.8 434 44.2
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.1e-80 304.7 433 43.6
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 3.6e-79 299.7 431 43.4
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 6.1e-79 298.9 534 39.0
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 1.5e-77 294.3 402 40.8
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 5.0e-73 279.3 427 39.3
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 5.2e-70 269.2 217 61.8
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 3.3e-69 266.5 436 39.4
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 5.7e-69 265.8 218 61.9
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 6.3e-68 262.3 424 39.9
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.2e-66 258.1 245 55.1
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 3.5e-66 256.5 226 57.5
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 1.4e-62 244.6 312 48.4
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 3.7e-60 236.5 315 44.8
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.0e-59 232.3 439 36.4
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 5.5e-56 222.6 311 46.0
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.5e-56 222.6 173 61.3
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 6.8e-54 215.7 167 60.5
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 2.9e-49 200.3 172 56.4
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 2.5e-48 197.2 159 65.4
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 1.8e-46 191.0 407 33.4
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.2e-45 188.3 143 60.1
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.2e-45 188.3 162 59.9
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.2e-45 188.3 159 59.1
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 5.7e-45 186.0 167 61.1
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 6.3e-44 182.6 262 47.7
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 1.8e-43 181.0 158 58.2
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 2.4e-43 180.6 131 64.9
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.2e-42 178.3 163 55.8
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.3e-41 174.9 196 48.5
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.3e-41 174.9 196 48.5
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 6.6e-41 172.6 293 38.6
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.5e-40 170.6 198 47.5
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 8.9e-38 162.2 476 29.0
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 2.6e-37 160.6 234 44.0
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 7.5e-37 159.1 131 57.3
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 2.0e-34 151.0 409 30.1
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 2.0e-34 151.0 145 48.3
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 2.7e-34 150.6 161 52.2
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 3.0e-33 147.1 143 55.2
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 9.5e-32 142.1 128 58.6
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 4.4e-29 133.3 271 35.8
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.3e-28 131.7 147 49.0
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.2e-28 131.0 139 42.4
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 6.6e-25 119.4 341 32.8
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 9.5e-24 115.5 149 49.0
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.1e-22 112.1 245 34.7
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 3.1e-22 110.5 128 36.7
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 5.2e-22 109.8 135 44.4
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 2.0e-21 107.8 158 42.4
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 8.3e-20 102.4 88 58.0
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 6.2e-15 86.3 159 39.6
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 6.4e-12 76.3 69 55.1
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 8.4e-12 75.9 196 32.7
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 5.4e-11 73.2 71 52.1
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 5.1e-09 66.6 108 38.0


User provided reference genes

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